These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAGGATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTTCCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTTCGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATTAACTAAAATATGTCTATGGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGACCTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTTTCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACATGAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATTACAGGAATACATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTACCTA] [+] EMBL CA767307 [AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAGGATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTTCCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTTCGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATTAACTAAAATATGTCTATGGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGACCTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTTTCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACATGAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATTACAGGAATACATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTACCTA] consensusID : consensus_3389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAGACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAAAAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTCCGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACGAGAATAATATTCTACGACTAAGAACTCATTTATTTTCACCATTTACTAAATATTATTTTATTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTCCTCGTGGGCGGATGATGCAATAGAATTTTGAATCAGCGTTTTGATCTTTGGTTATCCTTCATAGTAATAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTGAAATAAAATATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCATACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGACCTGTTGACCCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT] [+] EMBL CA998905 [CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAGACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAAAAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTCCGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACGAGAATAATATTCTACGACTAAGAACTCATTTATTTTCACCATTTACTAAATATTATTTTATTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTCCTCGTGGGCGGATGATGCAATAGAATTTTGAATCAGCGTTTTGATCTTTGGTTATCCTTCATAGTAATAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTGAAATAAAATATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCATACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGACCTGTTGACCCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3389#0 ------------------------------------------------------------ consensus_3389#1 CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAG 60 consensus_3389#0 ------------------------------------------------------------ consensus_3389#1 ACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAA 120 consensus_3389#0 ------------------------------------------------------------ consensus_3389#1 AAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTC 180 consensus_3389#0 ------AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACG 54 consensus_3389#1 CGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACG 240 * *** * * **** ************ ***** *** ******** ***** consensus_3389#0 AGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAG 114 consensus_3389#1 AGAATAATATTCTACGACTAAGAACTCATTTATTTTCA-------CCATTTACTAAATAT 293 *** *********** ***** ************** * *** ** *** * consensus_3389#0 GATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTT 174 consensus_3389#1 TATTTTATTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTC 353 ***** ******************** **** **** * ******** ********** consensus_3389#0 CCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTT 234 consensus_3389#1 CTCGTGGGCGGATGATGCAATAGAATTTTGAATCAG-CGTTTTGATCTTTGGTTATCCTT 412 * * ** ******* **************** *** *********************** consensus_3389#0 CGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATT 294 consensus_3389#1 CATAGTAATAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTG 472 * ***************** ***************** ************ ****** * consensus_3389#0 AACTAAAATATGTCTAT----GGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCA 350 consensus_3389#1 AAATAAAATATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCA 532 ** ************** *************** *** ********** ******* consensus_3389#0 TACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGAC 410 consensus_3389#1 TACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGAC 592 **** ************** ********************** ******* ***** *** consensus_3389#0 CTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCA 470 consensus_3389#1 CTGTTGACCCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT---------- 642 ******* * *************** ************************ consensus_3389#0 GACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTT 530 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 TCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGT 590 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 CCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACAT 650 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 GAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATT 710 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 ACAGGAATACATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTA 770 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 CCTA 774 consensus_3389#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||