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Oryza sativa
cluster # 3397 cluster # 3397       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3397#0 length = 1491 sequences # 2  

consensusID : consensus_3397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1491
fasta sequence
                              [CTCTCTCCCCTCCTCCTACCGCTCCCCATGGCCGCCGCCGCCACCCGCGCCGTCCGCCGCCTCCTCATCGCCTCGCGGAGTCTCCACGCAATCTCTTCCGAGGGAGCGGCGAGGGAGGCGGCCACGAGCTTCGTCCACCCCGCCGCCGTCGTCCACCCCGACGCCGTCGTCGGACAGGGTGTCTCGATAGGCCCATTTTGCACCGTGGGAGCTTCAGCGAGGATTGGTGACGCTTGTCAGTTACACGCTGGGAGCCATGTCATGGGAGATACCGAGCTAGGGGAGAGATGTGTTGTTCTCACTGGCGCTATCCTTGGTTCAGACATTCCTGGGCAAACCATTATCGGTGAAAACAATGTCATTGGACACCACGCTGTAGTTGGTGTTAAGTGCCAAGATCTCAAGTATAAGTCAGGAGATGAATGCTTTCTACAGATTGGTAACAATAATGAGATCAGAGAGTACTGTTCTATTCATCGCTCTTCTAAATCTTGTGACTGCACGGTTATTGGTGACAATAATCTTATAATGGGTTCATGCCATATAGCACATGATTGCAGGATTGGCAACAATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTGATCGCACAAGATGTGCCAAGATACATGATGGTTGCAGGTGATAGAGCAGAGCTTCGTGGGCTGAATCTTGAAGGTCTTAAGCGCAATGGTTTCTCAGACCAAGAGGTACGGATGTTGAGGAAAGCTTATCAACAAGTATTTATGCCATCTATTAATAGTCAGAGTAGCTTTGATGAGAGACTTGCTGAACTGGAACGGGAAATTGAGTTATCAGAAACTCATGTATCCTATATGGTGGAATCTATTCGCATGTCCTTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTATAAACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGAAGCATCGCTCATTCTTTGGACTGGGCATGTTTCACATCGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGTTAAAGCAAGAGTTTCTCGTTGATATTCTAATACCTGAACACAGGAATACATCATACAGATGTTGAATG-CCCCTTCACTCCAGATTTGACCAAATACTGTCGCATCTGGATATAGGACACTT-GGAAGTTGCGTGTC-GTTTCTTTTTCTTTTTTATTTTCTCTTGAGATGAGATGAGTAGTGGTGTTCGT-GGATGCACAAATGCTCCTTAGTCGTTGTACATATATTTGGCGTTGCCTCGGTTTTGTTCATCCTGTACAGTGTATGTATGTCGCCTCCTGGATCTCAGGCTCGAATTTGTATTGTCTGAACGATGTTACTGCTAGTGCTGAGATGGTCCAAAATTTGCATTGGTGT]

[+] EMBL AK066657             [CTCTCTCCCCTCCTCCTACCGCTCCCCATGGCCGCCGCCGCCACCCGCGCCGTCCGCCGCCTCCTCATCGCCTCGCGGAGTCTCCACGCAATCTCTTCCGAGGGAGCGGCGAGGGAGGCGGCCACGAGCTTCGTCCACCCCGCCGCCGTCGTCCACCCCGACGCCGTCGTCGGACAGGGTGTCTCGATAGGCCCATTTTGCACCGTGGGAGCTTCAGCGAGGATTGGTGACGCTTGTCAGTTACACGCTGGGAGCCATGTCATGGGAGATACCGAGCTAGGGGAGAGATGTGTTGTTCTCACTGGCGCTATCCTTGGTTCAGACATTCCTGGGCAAACCATTATCGGTGAAAACAATGTCATTGGACACCACGCTGTAGTTGGTGTTAAGTGCCAAGATCTCAAGTATAAGTCAGGAGATGAATGCTTTCTACAGATTGGTAACAATAATGAGATCAGAGAGTACTGTTCTATTCATCGCTCTTCTAAATCTTGTGACTGCACGGTTATTGGTGACAATAATCTTATAATGGGTTCATGCCATATAGCACATGATTGCAGGATTGGCAACAATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTGATCGCACAAGATGTGCCAAGATACATGATGGTTGCAGGTGATAGAGCAGAGCTTCGTGGGCTGAATCTTGAAGGTCTTAAGCGCAATGGTTTCTCAGACCAAGAGGTACGGATGTTGAGGAAAGCTTATCAACAAGTATTTATGCCATCTATTAATAGTCAGAGTAGCTTTGATGAGAGACTTGCTGAACTGGAACGGGAAATTGAGTTATCAGAAACTCATGTATCCTATATGGTGGAATCTATTCGCATGTCCTTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTATAAACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGAAGCATCGCTCATTCTTTGGACTGGGCATGTTTCACATCGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGTTAAAGCAAGAGTTTCTCGTTGATATTCTAATACCTGAACACAGGAATACATCATACAGATGTTGAATG CCCCTTCACTCCAGATTTGACCAAATACTGTCGCATCTGGATATAGGACACTT GGAAGTTGCGTGTC GTTTCTTTTTCTTTTTTATTTTCTCTTGAGATGAGATGAGTAGTGGTGTTCGT GGATGCACAAATGCTCCTTAGTCGTTGTACATATATTTGGCGTTGCCTCGGTTTTGTTCATCCTGTACAGTGTATGTATGTCGCCTCCTGGATCTCAGGCTCGAATTTGTATTGTCTGAACGATGTTACTGCTAGTGCTGAGATGGTCCAAAATTTGCATTGGTGT]
[+] EMBL CA767431             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCCATACAGCACATGATTGCAGGATTGGCAACAATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTGATCGCACAAGATGTGCCAAGATACATGATGGTTGCAGGTGATAGAGCAGAGCTTCGTGGGCTGAATCTTGAAGGTCTTAAGCGCAATGGTTTCTCAGACCAAGAGGTACGGATGTTGAGGAAAGCTTATCAACAAGTATTTATGCCATCTATTAATAGTCAGAGTAGCTTTGATGAGAGACTTGCTGAACTGGAACGGGAAATTGAGTTATCAGAAACTCATGTATCCTATATGGTGGAATCTATTCGCATGTCCTTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTATAAACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGAAGCATCGCTCATTCTTTGGACTGGGCATGNTTCACATCGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGNTAAAGCAAGAGTTTCTCGGTGATATTCTAATACCTGAACACAGGAATACATCATACAGATGNTGAATGNCCCCTTCACTTCAGATTTGACCAAATACTGNCGCATCTGGATATAGGACACTTGGGAAGNTGCGGGNCGGTTCCTTTTTCTTTTTTATTTCCNCTTGANANGAAATGAGTANNGGNGGTCATGGGATGCccna                                                                                                                                                            ]


>consensus_3397#0 CTCTCTCCCCTCCTCCTACCGCTCCCCATGGCCGCCGCCGCCACCCGCGCCGTCCGCCGC CTCCTCATCGCCTCGCGGAGTCTCCACGCAATCTCTTCCGAGGGAGCGGCGAGGGAGGCG GCCACGAGCTTCGTCCACCCCGCCGCCGTCGTCCACCCCGACGCCGTCGTCGGACAGGGT GTCTCGATAGGCCCATTTTGCACCGTGGGAGCTTCAGCGAGGATTGGTGACGCTTGTCAG TTACACGCTGGGAGCCATGTCATGGGAGATACCGAGCTAGGGGAGAGATGTGTTGTTCTC ACTGGCGCTATCCTTGGTTCAGACATTCCTGGGCAAACCATTATCGGTGAAAACAATGTC ATTGGACACCACGCTGTAGTTGGTGTTAAGTGCCAAGATCTCAAGTATAAGTCAGGAGAT GAATGCTTTCTACAGATTGGTAACAATAATGAGATCAGAGAGTACTGTTCTATTCATCGC TCTTCTAAATCTTGTGACTGCACGGTTATTGGTGACAATAATCTTATAATGGGTTCATGC CATATAGCACATGATTGCAGGATTGGCAACAATAACATATTTGCTAACAATACTCTATTT GCTGGCCATGTTGTTGTTGAAGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAA TTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTGATCGCACAAGATGTG CCAAGATACATGATGGTTGCAGGTGATAGAGCAGAGCTTCGTGGGCTGAATCTTGAAGGT CTTAAGCGCAATGGTTTCTCAGACCAAGAGGTACGGATGTTGAGGAAAGCTTATCAACAA GTATTTATGCCATCTATTAATAGTCAGAGTAGCTTTGATGAGAGACTTGCTGAACTGGAA CGGGAAATTGAGTTATCAGAAACTCATGTATCCTATATGGTGGAATCTATTCGCATGTCC TTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTAT AAACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGAAGCATCGCTCATTCTT TGGACTGGGCATGTTTCACATCGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGTTAA AGCAAGAGTTTCTCGTTGATATTCTAATACCTGAACACAGGAATACATCATACAGATGTT GAATGCCCCTTCACTCCAGATTTGACCAAATACTGTCGCATCTGGATATAGGACACTTGG AAGTTGCGTGTCGTTTCTTTTTCTTTTTTATTTTCTCTTGAGATGAGATGAGTAGTGGTG TTCGTGGATGCACAAATGCTCCTTAGTCGTTGTACATATATTTGGCGTTGCCTCGGTTTT GTTCATCCTGTACAGTGTATGTATGTCGCCTCCTGGATCTCAGGCTCGAATTTGTATTGT CTGAACGATGTTACTGCTAGTGCTGAGATGGTCCAAAATTTGCATTGGTGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)