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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1896 fasta sequence
[CGGCCGTTCACCGCCGCCTCCATCTCCCTCCTCGAAGCGCCTCCGCCGCCGCCGCCGCCGCCGAGGAGAGGTGTGTGTCGGCGAGCCCCTCACCTGACTCCAACCGCCGCCTTCGATGGGGCGCGTGAGGCCTCTCCACCACGCGGCGAGGAGGCTGCTGCTGCTGTTCCCGCGGCCGAGGGCCTTCTCCTCCGCCGCCGCTGCCGCGCCCTCGCGCGAGCCGCTCCACGTCTGCGTCGTCGGCAGCGGGCCCGCCGGGTTCTACACGGCCGACAAGATGCTTAAGGGCCATGAAGGAGCACAGGTCGATATTATTGATAGGCTGCCGACACCTTTTGGGTTAGTTCGATCTGGAGTGGCTCCAGATCATCCAGAAACAAAGATTGTGGTAAATCAATTTTCTCGTGTAGCTGCAAATGACCGCTGTCAATTCTATGGGAATGTAACACTAGGAAGGGATGTATCTCTATCAGAGCTTCGGAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGGTCACTTGGTATTCCTGGGGAGGATCTGAGGGGAATACATTCGGCTCGAGAGTTTGTGTGGTGGTATAATGGACATCCAGACATGTGCAACTTGGCACCTGACTTGCAAAGCACAGATTCTGCTGTTGTTCTAGGCCAGGGAAATGTTGCTCTTGATGTTGCCCGTATTCTTCTTCGTTGTACATCTGAGTTGGCTGCTACAGATATTGCTGATTATGCTTTGGATGCTCTCCGTGGCAGCACAATAAAGAAGGTATACTTGGTTGGGAGAAGGGGCCCAGTACAGGCAGCATGCACAGCTAAAGAACTACGTGAAATTTTAGGTTTGAAAAACGTCCATGTCTTCATCAAGGAGGCTGATCTTGTGACCTTGCCTGCAGATGAGGAGGAGATTAGGAATAGTAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTCCATTGTGCCGAAGAAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCATGGGACCTTCTGATTCAAAAAAGCAAGGCAGGAGGGGACTCCTTGAGATTCTAGAACAAAAGAACATCCGCTTTGTTCCTTTTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAAGAACAAACCTAGAGAGAAGATAACAACCTGGAATGAAATCCTGATGGCTTCAAACTAGGGATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAATTACATTAAAGCCAATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGAAAAGCTAGAATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACTTCTTATCATACAAATGGTTTCTCACTGTCCTGTGGTATCCATTTTTGAAACCTGGAGACAATTCGTTGCCAACTTTGGAGAAAATATTATTCCTGACAA]
[+] EMBL AK110791 [CGGCCGTTCACCGCCGCCTCCATCTCCCTCCTCGAAGCGCCTCCGCCGCCGCCGCCGCCGCCGAGGAGAGGTGTGTGTCGGCGAGCCCCTCACCTGACTCCAACCGCCGCCTTCGATGGGGCGCGTGAGGCCTCTCCACCACGCGGCGAGGAGGCTGCTGCTGCTGTTCCCGCGGCCGAGGGCCTTCTCCTCCGCCGCCGCTGCCGCGCCCTCGCGCGAGCCGCTCCACGTCTGCGTCGTCGGCAGCGGGCCCGCCGGGTTCTACACGGCCGACAAGATGCTTAAGGGCCATGAAGGAGCACAGGTCGATATTATTGATAGGCTGCCGACACCTTTTGGGTTAGTTCGATCTGGAGTGGCTCCAGATCATCCAGAAACAAAGATTGTGGTAAATCAATTTTCTCGTGTAGCTGCAAATGACCGCTGTCAATTCTATGGGAATGTAACACTAGGAAGGGATGTATCTCTATCAGAGCTTCGGAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGGTCACTTGGTATTCCTGGGGAGGATCTGAGGGGAATACATTCGGCTCGAGAGTTTGTGTGGTGGTATAATGGACATCCAGACATGTGCAACTTGGCACCTGACTTGCAAAGCACAGATTCTGCTGTTGTTCTAGGCCAGGGAAATGTTGCTCTTGATGTTGCCCGTATTCTTCTTCGTTGTACATCTGAGTTGGCTGCTACAGATATTGCTGATTATGCTTTGGATGCTCTCCGTGGCAGCACAATAAAGAAGGTATACTTGGTTGGGAGAAGGGGCCCAGTACAGGCAGCATGCACAGCTAAAGAACTACGTGAAATTTTAGGTTTGAAAAACGTCCATGTCTTCATCAAGGAGGCTGATCTTGTGACCTTGCCTGCAGATGAGGAGGAGATTAGGAATAGTAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTCCATTGTGCCGAAGAAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCATGGGACCTTCTGATTCAAAAAAGCAAGGCAGGAGGGGACTCCTTGAGATTCTAGAACAAAAGAACATCCGCTTTGTTCCTTTTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAAGAACAAACCTAGAGAGAAGATAACAACCTGGAATGAAATCCTGATGGCTTCAAACTAGGGATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAATTACATTAAAGCCAATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGAAAAGCTAGAATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACTTCTTATCATACAAATGGTTTCTCACTGTCCTGTGGTATCCATTTTTGAAACCTGGAGACAATTCGTTGCCAACTTTGGAGAAAATATTATTCCTGACAA]
consensusID : consensus_3398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[GAATGTTCCATCCACCTTCTCTCTTAGGTTATCTTGCTTGTGATTGTGATAGAGCAAAGCAATCTGATTGCAGGAGGAGATTAGGAATAGCAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGCGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTNCATTGTGCCGAAGAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGGTCATGGGACCNTCTGATTCAAAAAAGCAAGGCAGGANGGGACTCCCTTGAGATTCTANAACAAAAAACATCCGCTTTTGNTCCTTTTGATGGCTGGNAAAGATGATTCTAAGAAAAATGCAGGTGAGCTGAAAACAANCTANAGAGANATACCANCTGGAATGAAATCTGATGGCTTCAAACTAAGGATGNAAGNGAGGGCAGCCAATTTTGNTNTNTAACATGGCTTGGGAAATACCNTTAAAGC]
[+] EMBL CA767433 [GAATGTTCCATCCACCTTCTCTCTTAGGTTATCTTGCTTGTGATTGTGATAGAGCAAAGCAATCTGATTGCAGGAGGAGATTAGGAATAGCAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGCGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTNCATTGTGCCGAAGAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGGTCATGGGACCNTCTGATTCAAAAAAGCAAGGCAGGANGGGACTCCCTTGAGATTCTANAACAAAAAACATCCGCTTTTGNTCCTTTTGATGGCTGGNAAAGATGATTCTAAGAAAAATGCAGGTGAGCTGAAAACAANCTANAGAGANATACCANCTGGAATGAAATCTGATGGCTTCAAACTAAGGATGNAAGNGAGGGCAGCCAATTTTGNTNTNTAACATGGCTTGGGAAATACCNTTAAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3398#0 CGGCCGTTCACCGCCGCCTCCATCTCCCTCCTCGAAGCGCCTCCGCCGCCGCCGCCGCCG 60
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 CCGAGGAGAGGTGTGTGTCGGCGAGCCCCTCACCTGACTCCAACCGCCGCCTTCGATGGG 120
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 GCGCGTGAGGCCTCTCCACCACGCGGCGAGGAGGCTGCTGCTGCTGTTCCCGCGGCCGAG 180
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 GGCCTTCTCCTCCGCCGCCGCTGCCGCGCCCTCGCGCGAGCCGCTCCACGTCTGCGTCGT 240
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 CGGCAGCGGGCCCGCCGGGTTCTACACGGCCGACAAGATGCTTAAGGGCCATGAAGGAGC 300
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 ACAGGTCGATATTATTGATAGGCTGCCGACACCTTTTGGGTTAGTTCGATCTGGAGTGGC 360
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 TCCAGATCATCCAGAAACAAAGATTGTGGTAAATCAATTTTCTCGTGTAGCTGCAAATGA 420
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 CCGCTGTCAATTCTATGGGAATGTAACACTAGGAAGGGATGTATCTCTATCAGAGCTTCG 480
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 GAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGGTCACTTGGTAT 540
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 TCCTGGGGAGGATCTGAGGGGAATACATTCGGCTCGAGAGTTTGTGTGGTGGTATAATGG 600
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 ACATCCAGACATGTGCAACTTGGCACCTGACTTGCAAAGCACAGATTCTGCTGTTGTTCT 660
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 AGGCCAGGGAAATGTTGCTCTTGATGTTGCCCGTATTCTTCTTCGTTGTACATCTGAGTT 720
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 GGCTGCTACAGATATTGCTGATTATGCTTTGGATGCTCTCCGTGGCAGCACAATAAAGAA 780
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 GGTATACTTGGTTGGGAGAAGGGGCCCAGTACAGGCAGCATGCACAGCTAAAGAACTACG 840
consensus_3398#1 --------------------------------------------------GAATGTTCCA 10
* * *
consensus_3398#0 TGAAATTTTAGGTTTGAAAAACGTCCATGTCTTCATCAAGGAGGCTGATCTTGTGACCTT 900
consensus_3398#1 TCCACCTTCTCTCTTAGGTTATCT-----TGCTTGTGATTGTGATAGAGCAAAGCAATCT 65
* * ** ** * * * * * * * * ** * * *
consensus_3398#0 GCCTGCAGATGAGGAGGAGATTAGGAATAGTAGAATTAAAAGAAGGGTGTACGAGCTACT 960
consensus_3398#1 GATTGCAG-----GAGGAGATTAGGAATAGCAGAATTAAAAGAAGGGTGTACGAGCTACT 120
* ***** ***************** *****************************
consensus_3398#0 ATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTT 1020
consensus_3398#1 ATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTT 180
************************************************************
consensus_3398#0 TGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGC 1080
consensus_3398#1 TGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGC 240
************************************************************
consensus_3398#0 CGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGT 1140
consensus_3398#1 CGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGT 300
************************************************************
consensus_3398#0 TGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAA 1200
consensus_3398#1 TGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAA 360
************************************************************
consensus_3398#0 ATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAA 1260
consensus_3398#1 ATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAA 420
************************************************************
consensus_3398#0 GGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGT 1320
consensus_3398#1 GGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGT 480
************************************************************
consensus_3398#0 GG-GATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTCCATTGTGCCGAAG 1379
consensus_3398#1 GGCGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTNCATTGTGCCGAAG 540
** ******************************************* *************
consensus_3398#0 AAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCATGGGACCTTCTGATT 1439
consensus_3398#1 AA-CAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGGTCATGGGACCNTCTGATT 599
** ************************************** ********** *******
consensus_3398#0 CAAAAAAGCAAGGCAGGAGGGGACTCC-TTGAGATTCTAGAACAAAAGAACATCCGCTTT 1498
consensus_3398#1 CAAAAAAGCAAGGCAGGANGGGACTCCCTTGAGATTCTANAACAAAA-AACATCCGCTTT 658
****************** ******** *********** ******* ************
consensus_3398#0 -GTTCCTTTTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAA 1557
consensus_3398#1 TGNTCCTTTTGATGGCTGGNAAAGA--TGATTCTAAGAAAAAT---GCAGGTGAGCTGAA 713
* **************** *** ********** **** **************
consensus_3398#0 GAACAAACCTAGAGAGAAGATAACAACCTGGAATGAAATCCTGATGGCTTCAAACTAGGG 1617
consensus_3398#1 AA--CAANCTANAGAGANA--TACCANCTGGAATGAAATC-TGATGGCTTCAAACTAAGG 768
* ** *** ***** ** * ************* **************** **
consensus_3398#0 ATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAATTACATTAAAGCC 1677
consensus_3398#1 ATGNAAGNGAGGGCAGCCAATTTTGNTNTNTAACATGGCTTGGGAAATACCNTTAAAGC- 827
*** *** ******** ******** * * ** **** **** *** * *******
consensus_3398#0 AATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGA 1737
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 AAAGCTAGAATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACT 1797
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 TCTTATCATACAAATGGTTTCTCACTGTCCTGTGGTATCCATTTTTGAAACCTGGAGACA 1857
consensus_3398#1 ------------------------------------------------------------
consensus_3398#0 ATTCGTTGCCAACTTTGGAGAAAATATTATTCCTGACAA 1896
consensus_3398#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||