These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTGAGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGATGCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGACGTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTATATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCATGAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCTGTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGAAAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAAAGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGAAATCAATAATACATGTGCAAAAAAAAANA] [+] EMBL AU091511 [GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTGAGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGATGCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGACGTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTATATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCATGAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCTGTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGAAAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAAAGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGAAATCAATAATACATGTGCAAAAAAAAANA] consensusID : consensus_3413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [CCACTTCCATTTACATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGGAGAAAGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGATTTGCTGTGTTTTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGACTGTTTGTATAAGAAATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF321443 [CCACTTCCATTTACATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGGAGAAAGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGATTTGCTGTGTTTTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGACTGTTTGTATAAGAAATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3413#0 GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTG 60 consensus_3413#1 ------------------------------------------------------------ consensus_3413#0 AGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGAT 120 consensus_3413#1 ------------------------------------------------------------ consensus_3413#0 GCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGAC 180 consensus_3413#1 ------------------------------------------------------------ consensus_3413#0 GTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTA 240 consensus_3413#1 ------------------------------------------------------------ consensus_3413#0 TATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCAT 300 consensus_3413#1 ------------------------------------------------------------ consensus_3413#0 GAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCT 360 consensus_3413#1 ------------------------------------------------------------ consensus_3413#0 GTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGA 420 consensus_3413#1 ----------------------------------------------CCACTTCCATTTAC 14 ** * * consensus_3413#0 AAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAA 480 consensus_3413#1 ATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGGAGAA 74 * * **** *** ********************************** **** consensus_3413#0 AGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTT 540 consensus_3413#1 AGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGATTTGCTGTGTTTTT 134 ******* *********** ****** *********************** ********* consensus_3413#0 TTT---GTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGA 597 consensus_3413#1 TTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGACTGTTTGTATAAGA 194 *** *********************************** * **************** consensus_3413#0 AATCAATAATACATGTGCAAAAAAAAANA------------------------------- 626 consensus_3413#1 AATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 254 ******************* * ** consensus_3413#0 ------------------------------------------------------------ consensus_3413#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 314 consensus_3413#0 --------- consensus_3413#1 AAAAAAAAA 323 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||