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Oryza sativa
cluster # 3415 cluster # 3415       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3415#0 length = 1279 sequences # 1  
consensus_3415#1 length = 395 sequences # 1  

consensusID : consensus_3415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1279
fasta sequence
                              [CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAAATATAATCAGATGCATTAA]

[+] EMBL AK107597             [CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAAATATAATCAGATGCATTAA]


>consensus_3415#0 CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTAT ACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTG GTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAA GCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAA GACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCT CAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGAC CCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCC CCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCC CCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACC CACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCG CCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCT AAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAG TTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTT CTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAG AGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTG GCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTA GCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAA GCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATC TCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAG GAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTAT CTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAA ATATAATCAGATGCATTAA



consensusID : consensus_3415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence
                              [CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA]

[+] EMBL BI800928             [CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA]


>consensus_3415#1 CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTT TTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACC CGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAG AGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCA TGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTT TAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCG CAATTAATATATCCTTTATCGATATTATATAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3415#0      CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTAT 60
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      ACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTG 120
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      GTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAA 180
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      GCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAA 240
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      GACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCT 300
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGAC 360
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCC 420
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCC 480
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACC 540
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCG 600
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCT 660
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      AAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAG 720
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      TTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTT 780
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      CTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAG 840
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      AGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTG 900
consensus_3415#1      ------------------------------------------------------------
                                                                                  

consensus_3415#0      GCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGAT-GTCTCGCTACT 959
consensus_3415#1      -----------------CAACGTGCAACCGTCGATG-------ATGGTCGTCTGCCTACT 36
                                           ***** *** *   *       *** * ****  *****

consensus_3415#0      AGCGTC-CATT-GGCGAGCTAGTT---GGCGAGATGGAGAAGGTCCCCGC--TGACATCA 1012
consensus_3415#1      AGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCG 96
                      ****** **** ************   ***********************  ******* 

consensus_3415#0      TCC-AGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTT 1071
consensus_3415#1      TCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCC-ACCATACCCTT 155
                      *** ************************************ *******  *** ******

consensus_3415#0      GCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTG 1131
consensus_3415#1      GCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTG 215
                      ************************************************** *********

consensus_3415#0      GCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCT 1191
consensus_3415#1      GCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCT 275
                      *********************************** *********** ***** ******

consensus_3415#0      AGCTTCTATCTCGACTAGTAATTTT-AGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGT 1250
consensus_3415#1      AGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTAT 335
                      ************************* ******************************** *

consensus_3415#0      AGTGACTT-AAATATAATCAGAT-GCA-TTAA---------------------------- 1279
consensus_3415#1      AATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA 395
                      * ****** ************** *** ****                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)