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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1279 fasta sequence
[CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAAATATAATCAGATGCATTAA]
[+] EMBL AK107597 [CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAAATATAATCAGATGCATTAA]
consensusID : consensus_3415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA]
[+] EMBL BI800928 [CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3415#0 CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTAT 60
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 ACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTG 120
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 GTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAA 180
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 GCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAA 240
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 GACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCT 300
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGAC 360
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCC 420
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCC 480
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACC 540
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCG 600
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCT 660
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 AAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAG 720
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 TTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTT 780
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 CTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAG 840
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 AGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTG 900
consensus_3415#1 ------------------------------------------------------------
consensus_3415#0 GCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGAT-GTCTCGCTACT 959
consensus_3415#1 -----------------CAACGTGCAACCGTCGATG-------ATGGTCGTCTGCCTACT 36
***** *** * * *** * **** *****
consensus_3415#0 AGCGTC-CATT-GGCGAGCTAGTT---GGCGAGATGGAGAAGGTCCCCGC--TGACATCA 1012
consensus_3415#1 AGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCG 96
****** **** ************ *********************** *******
consensus_3415#0 TCC-AGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTT 1071
consensus_3415#1 TCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCC-ACCATACCCTT 155
*** ************************************ ******* *** ******
consensus_3415#0 GCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTG 1131
consensus_3415#1 GCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTG 215
************************************************** *********
consensus_3415#0 GCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCT 1191
consensus_3415#1 GCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCT 275
*********************************** *********** ***** ******
consensus_3415#0 AGCTTCTATCTCGACTAGTAATTTT-AGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGT 1250
consensus_3415#1 AGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTAT 335
************************* ******************************** *
consensus_3415#0 AGTGACTT-AAATATAATCAGAT-GCA-TTAA---------------------------- 1279
consensus_3415#1 AATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA 395
* ****** ************** *** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||