These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1279 fasta sequence [CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAAATATAATCAGATGCATTAA] [+] EMBL AK107597 [CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGACTTAAATATAATCAGATGCATTAA] consensusID : consensus_3415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA] [+] EMBL BI800928 [CAACGTGCAACCGTCGATGATGGTCGTCTGCCTACTAGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCGTCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCCACCATACCCTTGCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCTAGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTATAATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3415#0 CGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTAT 60 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 ACTGGTTCAGGCCCTCAAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTG 120 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 GTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAA 180 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 GCTGTCAGGGATGGGATTGTAAATGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAA 240 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 GACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCT 300 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGAC 360 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CCCACGGGTGGTGTCCTGACAAAGGGTACCCATTCCTTGACCTCCTCACCCGATAATGCC 420 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCC 480 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGTTCCCAACCAGCCACC 540 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGCTGCAGTTGTCTTGCCG 600 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCTTTTCAGCT 660 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 AAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAG 720 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 TTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCGCCTT 780 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 CTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAG 840 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 AGCAAAAGGGAGGCCCTTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTG 900 consensus_3415#1 ------------------------------------------------------------ consensus_3415#0 GCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCGCACTTCGATGAT-GTCTCGCTACT 959 consensus_3415#1 -----------------CAACGTGCAACCGTCGATG-------ATGGTCGTCTGCCTACT 36 ***** *** * * *** * **** ***** consensus_3415#0 AGCGTC-CATT-GGCGAGCTAGTT---GGCGAGATGGAGAAGGTCCCCGC--TGACATCA 1012 consensus_3415#1 AGCGTCACATTTGGCGAGCTAGTTTTGGGCGAGATGGAGAAGGTCCCCGCGCTGACATCG 96 ****** **** ************ *********************** ******* consensus_3415#0 TCC-AGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTT 1071 consensus_3415#1 TCCCAGAAAGCTGACTGGGACACCCGCATCGCCCTCAAGATTGGAGCC-ACCATACCCTT 155 *** ************************************ ******* *** ****** consensus_3415#0 GCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTG 1131 consensus_3415#1 GCTTGTATCTCGTCCAAGCATCCAGAGCTGGACCTCAACAAGGAGGTCCAAGAGGGTGTG 215 ************************************************** ********* consensus_3415#0 GCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACTGGCGAGGCGGTGGCT 1191 consensus_3415#1 GCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTCGAGAAGACTGGTGAGGCAGTGGCT 275 *********************************** *********** ***** ****** consensus_3415#0 AGCTTCTATCTCGACTAGTAATTTT-AGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGT 1250 consensus_3415#1 AGCTTCTATCTCGACTAGTAATTTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTAT 335 ************************* ******************************** * consensus_3415#0 AGTGACTT-AAATATAATCAGAT-GCA-TTAA---------------------------- 1279 consensus_3415#1 AATGACTTTAAATATAATCAGATCGCAATTAATATATCCTTTATCGATATTATATAAAAA 395 * ****** ************** *** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||