cluster # 3418

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Oryza sativa
cluster # 3418 cluster # 3418 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3418#0 length = 581 sequences # 1

consensus_3418#1 length = 459 sequences # 1

consensusID : consensus_3418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGATGATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGTGGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCGACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTGGTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAAGGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGCCGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGAGCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGAAACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA]

[+] EMBL BI803308             [TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGATGATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGTGGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCGACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTGGTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAAGGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGCCGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGAGCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGAAACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA]




>consensus_3418#0
TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGAT
GATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGT
GGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCG
ACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTG
GTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACT
CTGTTCAAGAGGCCAAGGACTTCGCCACGAGACATTCGAGAAGACCATCAAGGGTGAGAA
GGCAGCCAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGGC
CGCCGCCGAGAAGGATACCGAGGAGGATGAGGAGGAGTCTGAGCCCAAGGACAAGGACGA
GCTCTAAATCATTTTGTTACACTAATATATTATACTTATACAACTCACACAAAACACAGA
AACACTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA

consensusID : consensus_3418#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGACAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA]

[+] EMBL BI803933             [AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGACAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA]




>consensus_3418#1
AATTGGGTCCCAACCCAATTGGGGTTCGAACAAACCCCGAGTTTCCTTCGGAGGGACAGA
CAAAGGTTATAACACTCTTGCAAGGACAACGCCTACCTTGTTTCGAGTTTATGGCAAGTG
AAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACTCTGTTCAAGAGGCCAAGGAC
TTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGAGAAGGCAAGCCACAAGGAGG
CCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGAGGAGCCCGCCAGCCGAGAAG
GATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGACAAGGACGAGCTCTAAATCA
ATTTTGTTACAACTAATATATTATACTTATACAAACTCAAACAACAAAAACAACAAAAAC
AACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3418#0      TTTATTGATTTTCCCCCCCATTGCGTTGCCAAGATGCCTGCCAAGCTTGAGGACTGGGAT 60
consensus_3418#1      ------------------------------------------------------------
                                                                                  

consensus_3418#0      GATGAGCTCGATGGTGAGTGGGAGGCCCCCCAAATCCCCAACCTGAGTACAAGGGAGAGT 120
consensus_3418#1      ------------------------------------------------------------
                                                                                  

consensus_3418#0      GGAGAGCTAAGCAAATCCCCAACCCTGCCTACAAGGGCGAGTGGGTCCACCCATTGGTCG 180
consensus_3418#1      ---------AATTGGGTCCCAACCC-------AATTGGGGTTCGAACAAACCCCGAGTTT 44
                               *       ********       **  * *  * *  * * **    **  

consensus_3418#0      ACAACCCCGAGTTCTTCGAGGACGACAAGTTATACCTCTTCAAGGACAACGCCTACCTTG 240
consensus_3418#1      CCTTCGGAGGGACAGACAAAGGTTATAA----CACTCTTGCAAGGACAACGCCTACCTTG 100
                       *  *   * *     * * *   * **     **   * ********************

consensus_3418#0      GTTTCGAGTTATGGCAAGTGAAGGCTGGTACCATCTTCGATAACATCCTCGTCACCGACT 300
consensus_3418#1      TTTCGAGTTTATGGCAAGTGAAGCCTGGTACCATCTTCGATAACATCCTCGTCACCGACT 160
                       **     *************** ************************************

consensus_3418#0      CTGTTCAAGAGGCCAAGGACTTCGCCA--CGAGACATTCGAGAAGACCA-TCAAGGGTGA 357
consensus_3418#1      CTGTTCAAGAGGCCAAGGACTTCGCCAAACGAGACATTCGAGAAGACCAATCAAGGGTGA 220
                      ***************************  ******************** **********

consensus_3418#0      GAAGGCAGCC---AAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGA 414
consensus_3418#1      GAAGGCAAGCCACAAGGAGGCCGACGACAAGAAGCAAGAGGAAGAGAGAAAGAAGGCTGA 280
                      *******  *   ***********************************************

consensus_3418#0      GGAGGCCGCC-GCCGAGAAGGATACCGAGG-AGGATGAGGAGGAGTCTGAGCC-CAAGGA 471
consensus_3418#1      GGAGCCCGCCAGCCGAGAAGGATACCGAGGTAGGATGAGGAGGAGTCTGAGCCACAAGGA 340
                      **** ***** ******************* ********************** ******

consensus_3418#0      CAAGGACGAGCTCTAAATCA-TTTTGTTACA-CTAATATATTATACTTATACAA-CTCAC 528
consensus_3418#1      CAAGGACGAGCTCTAAATCAATTTTGTTACAACTAATATATTATACTTATACAAACTCAA 400
                      ******************** ********** ********************** **** 

consensus_3418#0      ACAA----AACA-CAGAAACA-CTGCCCAATAAAAAATCAAAAATATATAATGTAAAAA 581
consensus_3418#1      ACAACAAAAACAACAAAAACAACTGAAAAATAAAAAATAAAAAATATATAATGTAAAAA 459
                      ****    **** ** ***** ***   ********** ********************