cluster # 3419

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3419 cluster # 3419 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3419#0 length = 1105 sequences # 1

consensus_3419#1 length = 1031 sequences # 1

consensusID : consensus_3419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1105
fasta sequence

                              [TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTGTACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATGGGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCATGTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTACGAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAGGGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTACCTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTCCTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGGGAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCGGAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTGCTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGAGCCAGGAGCAGTGGTATCCCCGGTGGGTGTGGCAGCGCCTGGAGCATGGCGAGACGGAGGCGGTGGTGGCGCGGGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGACAAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGACCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCCCATGACCACGTCGCAGCGCCCACCGTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACTTCCTCTTTCTCCTCGCTGTTACACACGGATGACACCACTGGAGGCACCACCTCCACTCACATCTCACATCACATCACTTAATTACTTCTTCCAAAAATTCTTTGCTAACTACTCCCTCAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTCTTATTTAAAAAAAATATGATTAGTA]

[+] EMBL AK109632             [TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTGTACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATGGGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCATGTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTACGAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAGGGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTACCTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTCCTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGGGAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCGGAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTGCTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGAGCCAGGAGCAGTGGTATCCCCGGTGGGTGTGGCAGCGCCTGGAGCATGGCGAGACGGAGGCGGTGGTGGCGCGGGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGACAAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGACCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCCCATGACCACGTCGCAGCGCCCACCGTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACTTCCTCTTTCTCCTCGCTGTTACACACGGATGACACCACTGGAGGCACCACCTCCACTCACATCTCACATCACATCACTTAATTACTTCTTCCAAAAATTCTTTGCTAACTACTCCCTCAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTCTTATTTAAAAAAAATATGATTAGTA]




>consensus_3419#0
TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTG
TACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATG
GGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCAT
GTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTAC
GAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAG
GGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTAC
CTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTC
CTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGG
GAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCG
GAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTG
CTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGAGCCAGGAGCAGTGGTATCCCCGG
TGGGTGTGGCAGCGCCTGGAGCATGGCGAGACGGAGGCGGTGGTGGCGCGGGCGCGGGCG
CAGGGAGGCGCCGCCGCCGCCGACAAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGC
GTGCAGTACAGGCCGGAGGACCGACCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCC
CATGACCACGTCGCAGCGCCCACCGTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATC
ATCACCACTTCCTCTTTCTCCTCGCTGTTACACACGGATGACACCACTGGAGGCACCACC
TCCACTCACATCTCACATCACATCACTTAATTACTTCTTCCAAAAATTCTTTGCTAACTA
CTCCCTCAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTC
TTATTTAAAAAAAATATGATTAGTA

consensusID : consensus_3419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1031
fasta sequence

                              [AAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCGCGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACGTGTCGGAAACGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCAGCTAGGCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTTAGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCGGTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGGTTAGACATGTGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTGCTATATATTTGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATCATAGTGTAATT]

[+] EMBL AK109273             [AAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCGCGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACGTGTCGGAAACGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCAGCTAGGCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTTAGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCGGTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGGTTAGACATGTGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTGCTATATATTTGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATCATAGTGTAATT]




>consensus_3419#1
AAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAG
CCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCC
AAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGG
TACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGC
TACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGG
GCCGGCGCGCGCGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTC
GAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGG
AGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGG
CCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATC
GCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCG
ACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACG
TGTCGGAAACGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTT
GTCAGCTAGGCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTA
CAACATTTTAGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTA
AACGTTTCGGTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGG
TTAGACATGTGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTG
CTATATATTTGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATC
ATAGTGTAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3419#0      TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTG 60
consensus_3419#1      ------------------------------------------------------------
                                                                                  

consensus_3419#0      TACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATG 120
consensus_3419#1      ------------------------------------------------------------
                                                                                  

consensus_3419#0      GGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCAT 180
consensus_3419#1      ------------------------------------------------------------
                                                                                  

consensus_3419#0      GTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTAC 240
consensus_3419#1      ------------------------------------------------------------
                                                                                  

consensus_3419#0      GAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAG 300
consensus_3419#1      ------------------------------------------------------------
                                                                                  

consensus_3419#0      GGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTAC 360
consensus_3419#1      ---------------------------------------------AAGGCGGTGCGGTAC 15
                                                                   ****** * ******

consensus_3419#0      CTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTC 420
consensus_3419#1      CTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTC 75
                      ** ***** ********** *************************** *  ** ** ***

consensus_3419#0      CTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGG 480
consensus_3419#1      CTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGG 135
                      ** * **  * * *** **********   *********** ** * *************

consensus_3419#0      GAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCG 540
consensus_3419#1      GAGGACACCCACCTGACCATCAC---CGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCG 192
                      *** * ** ******** ** **   ***** * * *********** ************

consensus_3419#0      GAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTG 600
consensus_3419#1      GAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTG 252
                      ********** **** * ** ******************************** *** **

consensus_3419#0      CTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGA-----GCCAGG------------ 643
consensus_3419#1      CTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCGC 312
                      *********** ** **      **      *****      *** **            

consensus_3419#0      -------------AGCAGTGGTATCCCCGGTGGGTGTGGCAGCGCCTGGAGCATGGCGAG 690
consensus_3419#1      GGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAG 372
                                   ** ******* ** ************** **  * ***   ******

consensus_3419#0      ACGGAGGCGGTGGTGGCGCG------GGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGAC 744
consensus_3419#1      ACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAG 432
                      ******** *** *******      ****  ****  *** ****     *     ** 

consensus_3419#0      AAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGA 804
consensus_3419#1      AAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGG 492
                      ********* ** ****** ****** ** *************************** * 

consensus_3419#0      CCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCCCATGACCACGTCGCAGCGCCCACC 864
consensus_3419#1      CCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCC--GC 550
                      ********** ** *** ** * ****** ** *   * ****** **** *****   *

consensus_3419#0      GTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACTTCCTCTTTCTCC--- 921
consensus_3419#1      G-CAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACT 609
                      * ** *** ** ** ** ****  **  *   *  *  *  * * **  *   * **   

consensus_3419#0      -TCGCTGTTACACA--CGGATGACACCACTGGAGGCACCACCTC-CACTCACATCTCACA 977
consensus_3419#1      ACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACGTGTCGGAAA 669
                        ***    **  *  ******   *  * *   * ***  *    *  *   **  * *

consensus_3419#0      TCACATCAC-TTAATTACTTCTTCCAAAAATTCTT--------TGCTAACTACTCCCT-- 1026
consensus_3419#1      CGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCAGCTAG 729
                        *  ** * **   *  ********    * *          **  *  *     **  

consensus_3419#0      -CAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTCTTATT 1085
consensus_3419#1      GCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTT 789
                       *  **   **  ***    * *     *    ** * ** *  *  * * *  * * **

consensus_3419#0      TAAAAAAAATATGATTAGTA---------------------------------------- 1105
consensus_3419#1      AGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCG 849
                              * *   ***                                           

consensus_3419#0      ------------------------------------------------------------
consensus_3419#1      GTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGGTTAGACATG 909
                                                                                  

consensus_3419#0      ------------------------------------------------------------
consensus_3419#1      TGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTGCTATATATT 969
                                                                                  

consensus_3419#0      ------------------------------------------------------------
consensus_3419#1      TGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATCATAGTGTAA 1029
                                                                                  

consensus_3419#0      --
consensus_3419#1      TT 1031