cluster # 3422

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Oryza sativa
cluster # 3422 cluster # 3422 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3422#0 length = 875 sequences # 1

consensus_3422#1 length = 725 sequences # 1

consensusID : consensus_3422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 875
fasta sequence

                              [ACAAGAAAACCAAAACAGCAACCAATCAACAAGCGATCGAGCACCTTCGCCGCCGTTGAAGACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAGTTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACCACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAATTAAGGAGAGCTCGAAGAGCAATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCTTTCTGATCTTCCGATGTGAATACCACGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCATGTATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACGGAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCTTTCTAAATGGAAAAAGGGCT]

[+] EMBL AK111090             [ACAAGAAAACCAAAACAGCAACCAATCAACAAGCGATCGAGCACCTTCGCCGCCGTTGAAGACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAGTTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACCACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAATTAAGGAGAGCTCGAAGAGCAATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCTTTCTGATCTTCCGATGTGAATACCACGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCATGTATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACGGAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCTTTCTAAATGGAAAAAGGGCT]




>consensus_3422#0
ACAAGAAAACCAAAACAGCAACCAATCAACAAGCGATCGAGCACCTTCGCCGCCGTTGAA
GACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTC
CTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAG
TTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACC
ACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCC
GACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCC
GACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCAC
CATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTG
AGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGC
AGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAA
TTAAGGAGAGCTCGAAGAGCAATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCT
TTCTGATCTTCCGATGTGAATACCACGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCA
ATCCGTCGACGCATGTATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAG
GGGAAAACGGTGACGGAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTT
GGGTTCATTCAAGCTTTCTAAATGGAAAAAGGGCT

consensusID : consensus_3422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGCCGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTGCTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAGCGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCACCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCCCTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGAAGAAGAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGCGGCTCCGCCGCCGCGGCGAGCACCGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGACGAGCCACCGCCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCTGGAGAGCATAGCGGAGGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTTGACCATTTTTTTTCCTTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTGTGAATATGAACGGTGGATGA]

[+] EMBL AK109305             [CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGCCGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTGCTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAGCGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCACCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCCCTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGAAGAAGAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGCGGCTCCGCCGCCGCGGCGAGCACCGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGACGAGCCACCGCCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCTGGAGAGCATAGCGGAGGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTTGACCATTTTTTTTCCTTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTGTGAATATGAACGGTGGATGA]




>consensus_3422#1
CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGC
CGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTG
CTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAG
CGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCA
CCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCC
CTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTT
CCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGAAGAA
GAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGCGGCTCCGCCGCCGCGGCGAGCAC
CGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGACGAGCCACCG
CCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCTGGAGAGCATAGCGGA
GGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTTGACCATTTTTTTTCC
TTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTGTGAATATGAACGGTG
GATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3422#0      -----ACAAGAAAACCAAAACAGC-----AACCAATCAACAAGCGATCGAGCACCTTCGC 50
consensus_3422#1      CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGC 60
                            ** *    **    *  *     * *  *** **  *       *** **  **

consensus_3422#0      CGCCGTT------GAAGACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTG 104
consensus_3422#1      CGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTG 120
                      *****        ****  ** ** *    * *  * * ****** *********** **

consensus_3422#0      CTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAG 164
consensus_3422#1      CTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAG 180
                      ************* * *********** ** *************** **** ********

consensus_3422#0      CGGCCACGTCGACGAGTTCA---GCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCA 221
consensus_3422#1      CGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCA 240
                      ***** **************   ******** ******* * ** ************ **

consensus_3422#0      CCCCAACCACACGCTCACCACCACGTGGTCCTC------CGCCGGCGTCGGGTGC---CC 272
consensus_3422#1      CCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCC 300
                      ********** ******** ** * *****  *      ******** ***  **   **

consensus_3422#0      CACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTT 332
consensus_3422#1      CTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTT 360
                      *  ** **** ********** ** ** ********************************

consensus_3422#0      CCTCATCCCCTCGGCGA---CCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTC 389
consensus_3422#1      CCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGA---- 416
                      ************ ***    **  *** **** *   * ** ** ** *** * **    

consensus_3422#0      CAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGC 449
consensus_3422#1      --AGAAGAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGC---GGCTCCGCCGCCGC 471
                        * *******      * *   ** **  * **  **** **   *** * **  * **

consensus_3422#0      CGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGC 509
consensus_3422#1      GGCGAGCACCGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGAC 531
                       ******** ********************** ****** ************  ** * *

consensus_3422#0      GTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCT 569
consensus_3422#1      G------AGCCACCGCCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCT 585
                      *       **** **  ******* ******   ** * *** *****************

consensus_3422#0      CGAGAGCATAGTGGAGGAGCAATCGGATTAATTAAGGAG--AGCTCGAAGAGCA------ 621
consensus_3422#1      GGAGAGCATAGCGGAGGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTT 645
                       ********** ******** *** ** **  ** * **  **** *   * **      

consensus_3422#0      -ATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCTTTCT----GATCTTCCGATG 676
consensus_3422#1      GACCATTTTTTTTCCTTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTG 705
                       * * * ***** *  ** * * * **** ** ****  * **     ********* **

consensus_3422#0      TGAATACCA-CGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCATG 735
consensus_3422#1      TGAATATGAACGGTGGATGA---------------------------------------- 725
                      ******  * **   **  *                                        

consensus_3422#0      TATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACG 795
consensus_3422#1      ------------------------------------------------------------
                                                                                  

consensus_3422#0      GAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCT 855
consensus_3422#1      ------------------------------------------------------------
                                                                                  

consensus_3422#0      TTCTAAATGGAAAAAGGGCT 875
consensus_3422#1      --------------------