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Oryza sativa
cluster # 3427 cluster # 3427       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3427#0 length = 2016 sequences # 2  

consensusID : consensus_3427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2016
fasta sequence
                              [TCTCTGCCCCTTGCTACCTCCCGCGGCGCCGCCGCCGCCGATCAGCACCAGCCGAAGTCCAGGCAGGCGGCTCGCAGGAGCAGCTCAGCAGCGGCGAGGACCAAGTCGTCAAGTCGACGCGGAGGCAATGCACTAATGCAGAGGCCAAATCGAAGGAGGCGGCGGGGTAGGTCCTGCCGTGGAGGTCGAATCCCCGGAGGGGAACGAGCCGGCGAGGTGGGATTCGGCCGGCCGCATACACGCGCCTCCAAGTCCACTTTACAGGAAAAAGACTTGATGGCACTTGGTTTGCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCCTCCAGAATTAGCAGGCACCAAGTCTCGGTGTCCAGTTGATATCCCAGGGAATATTGCCCCCAATGAAGCACTGCGGTTTGATATTGAGCTCATCTCTCTTGTCACCATAACTGACATCCTCGATGATGAAGGCATACTGAAAAAGATCATCAAGCGTGGACTGGGGAGCGATAAGCCTTGTGATTTGGATGAAGCACTTGTGAACTACAATGCTTGCCTGGAGGATGGGATGTCAGTGTCCATGTCTGAAGGTATTGAGTTCAACCTTGCGGAAGGCTTCTTTTGTCCTGCATTTGCACGTGCTGTGGAGACTATGACAGAAGGAGAGGAAGCTGTTCTCATTGTTAAACCTGAATATGGTTTTGGTGAACGGGGTAGACCATCCATAGGGGATGAAGCCGGTGTGCCACCTGATGCAACTCTCTATGTGTACCTTCAATTGATGTCATGGAAAACAGTGAGGCACATTGGAGAGAATGGGACAATCCTCAAGAAAACCCTTTGTAGAGGAAATTTGGAAGGACAGCAGACAGAGAATGAAGCAGTGGTCGGAGTTCGACTGATTGGTAAACTGCAAGATGGGGCTGTATTTGATCAGAGGGGCCACGAAGGAGATGAGCCGTTCAAGTTCATGGTTGACGAAGAGCAGGTTAGCGAAGGCCTAGAGGAAGCTGTTCTTACAATGCGGGAGGGAGAGGTCTCCTTGTTCACCATTCCCCCCCATCGTGTGCAGGATCAACTTTTGGTTGTCCCTGTTGGCTCTTCCGTGACCTACGAAATCGAGCTTGTCTCAGTTGTAAATGACAAGCCTCCCCGGCTCATGAGTCAAGCAGAGACCATCGAAGCTGCAGCTGAAAAGGAAAAGGAGGGAGACAAACTGTTCAGCTCAAGCAAATTTTTGAGAGCTTACAGGAGATATTACAAGGCCAGGCAGATCATACTCCTGCGCTTTGGACGAGGAGAAACAGATGAAGAAATTAAACAAATGTTGATTTCCCTTACCTTCAAAGCTGCTGAGTGCGCGAATCAGCTTCAACGCTATGAACAAGCATACCACCGCTATCGTGAGATATTGGAGTATGACCCTGGAAATGTGAAAGCACGGGAAATGACAGGGC-GGGCATTCCCTGAAGCATCTCTTGGAATAGACACTGCCGCAATGCATAGGGGCTTGGATCAGCCATTTAGGCCGAAAGAAGAGTTTCGCGTGTGCGGCGGCTACATGACCCCGGAGTTCTCTGAGATGAGACTGAAGCAAGGGCATAAATACCATGGAAGTATAAATATTTTTGTCCCTCCTATCCCAAGACCAGAGACCAATGCAAATCAAGCTGTTCCAGCTGCTCCTACAGGCCACAGGCTCACACACAGCCCTACTACACCTCCAGGTCCAAATAATGAGAAAAGAAACAGAAGCAGTCGTGTTCCAGTCGCTGCCAGGAAGGGGCTAGCTTCTTGCTTCAGATGCATCTCTTCAGATTGTAACTGAAGACATGTTCCCTGAAAGCAATAAAGAAAAAAAATCTTGACCAGCAACAGGGCTGTACTAACACTAGTTTATTTTTTTTCGAACTAATAATTTAACTTAGGTCGAAATTAATGAC]

[+] EMBL AK072598             [TCTCTGCCCCTTGCTACCTCCCGCGGCGCCGCCGCCGCCGATCAGCACCAGCCGAAGTCCAGGCAGGCGGCTCGCAGGAGCAGCTCAGCAGCGGCGAGGACCAAGTCGTCAAGTCGACGCGGAGGCAATGCACTAATGCAGAGGCCAAATCGAAGGAGGCGGCGGGGTAGGTCCTGCCGTGGAGGTCGAATCCCCGGAGGGGAACGAGCCGGCGAGGTGGGATTCGGCCGGCCGCATACACGCGCCTCCAAGTCCACTTTACAGGAAAAAGACTTGATGGCACTTGGTTTGCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCCTCCAGAATTAGCAGGCACCAAGTCTCGGTGTCCAGTTGATATCCCAGGGAATATTGCCCCCAATGAAGCACTGCGGTTTGATATTGAGCTCATCTCTCTTGTCACCATAACTGACATCCTCGATGATGAAGGCATACTGAAAAAGATCATCAAGCGTGGACTGGGGAGCGATAAGCCTTGTGATTTGGATGAAGCACTTGTGAACTACAATGCTTGCCTGGAGGATGGGATGTCAGTGTCCATGTCTGAAGGTATTGAGTTCAACCTTGCGGAAGGCTTCTTTTGTCCTGCATTTGCACGTGCTGTGGAGACTATGACAGAAGGAGAGGAAGCTGTTCTCATTGTTAAACCTGAATATGGTTTTGGTGAACGGGGTAGACCATCCATAGGGGATGAAGCCGGTGTGCCACCTGATGCAACTCTCTATGTGTACCTTCAATTGATGTCATGGAAAACAGTGAGGCACATTGGAGAGAATGGGACAATCCTCAAGAAAACCCTTTGTAGAGGAAATTTGGAAGGACAGCAGACAGAGAATGAAGCAGTGGTCGGAGTTCGACTGATTGGTAAACTGCAAGATGGGGCTGTATTTGATCAGAGGGGCCACGAAGGAGATGAGCCGTTCAAGTTCATGGTTGACGAAGAGCAGGTTAGCGAAGGCCTAGAGGAAGCTGTTCTTACAATGCGGGAGGGAGAGGTCTCCTTGTTCACCATTCCCCCCCATCGTGTGCAGGATCAACTTTTGGTTGTCCCTGTTGGCTCTTCCGTGACCTACGAAATCGAGCTTGTCTCAGTTGTAAATGACAAGCCTCCCCGGCTCATGAGTCAAGCAGAGACCATCGAAGCTGCAGCTGAAAAGGAAAAGGAGGGAGACAAACTGTTCAGCTCAAGCAAATTTTTGAGAGCTTACAGGAGATATTACAAGGCCAGGCAGATCATACTCCTGCGCTTTGGACGAGGAGAAACAGATGAAGAAATTAAACAAATGTTGATTTCCCTTACCTTCAAAGCTGCTGAGTGCGCGAATCAGCTTCAACGCTATGAACAAGCATACCACCGCTATCGTGAGATATTGGAGTATGACCCTGGAAATGTGAAAGCACGGGAAATGACAGGGC GGGCATTCCCTGAAGCATCTCTTGGAATAGACACTGCCGCAATGCATAGGGGCTTGGATCAGCCATTTAGGCCGAAAGAAGAGTTTCGCGTGTGCGGCGGCTACATGACCCCGGAGTTCTCTGAGATGAGACTGAAGCAAGGGCATAAATACCATGGAAGTATAAATATTTTTGTCCCTCCTATCCCAAGACCAGAGACCAATGCAAATCAAGCTGTTCCAGCTGCTCCTACAGGCCACAGGCTCACACACAGCCCTACTACACCTCCAGGTCCAAATAATGAGAAAAGAAACAGAAGCAGTCGTGTTCCAGTCGCTGCCAGGAAGGGGCTAGCTTCTTGCTTCAGATGCATCTCTTCAGATTGTAACTGAAGACATGTTCCCTGAAAGCAATAAAGAAAAAAAATCTTGACCAGCAACAGGGCTGTACTAACACTAGTTTATTTTTTTTCGAACTAATAATTTAACTTAGGTCGAAATTAATGAC]
[+] EMBL CA998139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCTTGTCTCAGTTGTAAATGACAAGCCTCCCCGGCTCATGAGTCAAGCAGAGACCATCGAAGCTGCAGCTGAAAAGGAAAAGGAGGGAGACAAACTGTTCAGCTCAAGCAAATTTTTGAGAGCTTACAGGAGATATTACAAGGCCAGGCAGATCATACTCCTGCGCTTTGGACGAGGAGAAACAGATGAAGAAATTAAACAAATGTTGATTTCCCTTACCTTCAAAGCTGCTGAGTGCGCGAATCAGCTTCAACGCTATGAACAAGCATACCACCGCTATCGTGAGATATTGGAGTATGACCCTGGAAATGTGAAAGCACGGGAAATGACAGGGCGGGGCA TCCCTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_3427#0 TCTCTGCCCCTTGCTACCTCCCGCGGCGCCGCCGCCGCCGATCAGCACCAGCCGAAGTCC AGGCAGGCGGCTCGCAGGAGCAGCTCAGCAGCGGCGAGGACCAAGTCGTCAAGTCGACGC GGAGGCAATGCACTAATGCAGAGGCCAAATCGAAGGAGGCGGCGGGGTAGGTCCTGCCGT GGAGGTCGAATCCCCGGAGGGGAACGAGCCGGCGAGGTGGGATTCGGCCGGCCGCATACA CGCGCCTCCAAGTCCACTTTACAGGAAAAAGACTTGATGGCACTTGGTTTGCATCCACCA GAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGAGAATGTGATGCGAGGCTTCA GTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCCTCCAGAAT TAGCAGGCACCAAGTCTCGGTGTCCAGTTGATATCCCAGGGAATATTGCCCCCAATGAAG CACTGCGGTTTGATATTGAGCTCATCTCTCTTGTCACCATAACTGACATCCTCGATGATG AAGGCATACTGAAAAAGATCATCAAGCGTGGACTGGGGAGCGATAAGCCTTGTGATTTGG ATGAAGCACTTGTGAACTACAATGCTTGCCTGGAGGATGGGATGTCAGTGTCCATGTCTG AAGGTATTGAGTTCAACCTTGCGGAAGGCTTCTTTTGTCCTGCATTTGCACGTGCTGTGG AGACTATGACAGAAGGAGAGGAAGCTGTTCTCATTGTTAAACCTGAATATGGTTTTGGTG AACGGGGTAGACCATCCATAGGGGATGAAGCCGGTGTGCCACCTGATGCAACTCTCTATG TGTACCTTCAATTGATGTCATGGAAAACAGTGAGGCACATTGGAGAGAATGGGACAATCC TCAAGAAAACCCTTTGTAGAGGAAATTTGGAAGGACAGCAGACAGAGAATGAAGCAGTGG TCGGAGTTCGACTGATTGGTAAACTGCAAGATGGGGCTGTATTTGATCAGAGGGGCCACG AAGGAGATGAGCCGTTCAAGTTCATGGTTGACGAAGAGCAGGTTAGCGAAGGCCTAGAGG AAGCTGTTCTTACAATGCGGGAGGGAGAGGTCTCCTTGTTCACCATTCCCCCCCATCGTG TGCAGGATCAACTTTTGGTTGTCCCTGTTGGCTCTTCCGTGACCTACGAAATCGAGCTTG TCTCAGTTGTAAATGACAAGCCTCCCCGGCTCATGAGTCAAGCAGAGACCATCGAAGCTG CAGCTGAAAAGGAAAAGGAGGGAGACAAACTGTTCAGCTCAAGCAAATTTTTGAGAGCTT ACAGGAGATATTACAAGGCCAGGCAGATCATACTCCTGCGCTTTGGACGAGGAGAAACAG ATGAAGAAATTAAACAAATGTTGATTTCCCTTACCTTCAAAGCTGCTGAGTGCGCGAATC AGCTTCAACGCTATGAACAAGCATACCACCGCTATCGTGAGATATTGGAGTATGACCCTG GAAATGTGAAAGCACGGGAAATGACAGGGCGGGCATTCCCTGAAGCATCTCTTGGAATAG ACACTGCCGCAATGCATAGGGGCTTGGATCAGCCATTTAGGCCGAAAGAAGAGTTTCGCG TGTGCGGCGGCTACATGACCCCGGAGTTCTCTGAGATGAGACTGAAGCAAGGGCATAAAT ACCATGGAAGTATAAATATTTTTGTCCCTCCTATCCCAAGACCAGAGACCAATGCAAATC AAGCTGTTCCAGCTGCTCCTACAGGCCACAGGCTCACACACAGCCCTACTACACCTCCAG GTCCAAATAATGAGAAAAGAAACAGAAGCAGTCGTGTTCCAGTCGCTGCCAGGAAGGGGC TAGCTTCTTGCTTCAGATGCATCTCTTCAGATTGTAACTGAAGACATGTTCCCTGAAAGC AATAAAGAAAAAAAATCTTGACCAGCAACAGGGCTGTACTAACACTAGTTTATTTTTTTT CGAACTAATAATTTAACTTAGGTCGAAATTAATGAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)