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Oryza sativa
cluster # 3430 cluster # 3430       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3430#0 length = 1941 sequences # 2  

consensusID : consensus_3430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1941
fasta sequence
                              [CCCTCCCTTATTCTCCCATCACACTCTCCTCCTCTTCTTCCTCCCTGGTTCCTAACTCCTCTACCCCACATCATTCCAATCCTATCATGGTGGTGGTAGAGAAATATAGAGAGAGCTAGAAGGGGAAGAGAAGAGAGAAGATTTCTAGCTTAATTAGAAGGGTTGTTACTATGGGGGAGGTGAAGGAGAATGAGGTGGTAGAGATTTTTGAGCATGATCATGACAACAAGATCAGATCTCCTGAAAACTCTGTGCCACCAGCCATGGTGCTGGACCTCAACGAGGGCTTCGGCGAGGGCAGCGAGGAAGGGGGAGTTGGCGAAGACGGAGATGAAGAAGACGATGATGAGGACGACGACGACGACGACGATGACGATGGCGGTAGCACAAGCGAAGTTGCCGGAGGAGGGAGGAGCTCCAGCAACAACAGCAGCACCAACCACAATTCCGGGAGCGACAAGGACCATGACATGAACAGCAGCAGCAGCAAGGCCGACGGCGGCGGCGACAGGGTGCCGACGGTGCGGCAGTACAACCGGTCTAAGCTCCCCCGGCTCCGGTGGACGCCCGACCTCCACATGGCGTTCGTCCACGCCGTCGAGAGGTTGGGCGGCCAAGAAAGAGCAACACCAAAGCTTGTGCTTCAGATGATGAATGTGAGGGGGCTCAGCATTGCTCATGTCAAAAGCCATTTGCAGATGTACAGAAGCAAAAAGCTAGACCACGAGTCTGGCCACGAGAGAGGAGCCATCTCATCAGTGTTTTCGCCCATGGAGTTCCACATGAGGAGAGGGGACCATCGTTTCCACCACCACGACATGTTCTTCCAGCGAGCCGCCGCCGCTGGCGTCTCGCCGTTCTCCTCCAGGATGCTGCACGAGAACGGCGGCGGGTTCTTCGCTTCGAGGAATCCCGGCTTGCCGGAGTCCAGCCGGCTCTACGGTCTCTTCCAACGCCGGCAGCAAGCTCCCATGCAAAAATTCGACTTCAAGAACTGCAATAGCTTCAGTAGGAACCAGGAGTGGGCGTTCAACCAGCAGCACGCGGCGGCGAGGGCCGCCGGCGCCGTCAACGGCCACGGCCCGGCGAAAGGGCTCATCCACGAGATGATCTTCCGGAAGGAAGGAAAGCCGACGTCGCATCTGTTCGACGTGAGGGACGCCATCGCCTCCACCCGGGTGACCTCGGCGACCACGGCCGCCGCCGCCGACCACCGGCTAGACGGCGCCGGGAAGGCCGGCAACTTTGATTGGATCGGGAGCAGCTCCTCCCGGCCGCTCACGAGGACAATGTCAGCGGCGGCGGCGGCTACCATGGGCGACCACCACCATCTTCGGTGGCGAGGCGGCGCCGCCGGCAGCGGGAACACGACGGCGTCGTCGGATCCGGTGGTCGCAAGCGAAGCTGCCCTAGGTTCCCTGCTCGAGAGGGCAAAGACGAAAGCGACCGAGGCGATGCGCCTCGAGACGCCGGTGAAGATGACGGCGGCGGCGGTGGCGGCGGAGGAGATCAACGGCAGGACGCCGGACTTGCAGCTGAGTTTGAGCCCGAACGCGGGAGATCACAGATCAGCCGGCGAGAAGAGGAAGTTCTTGAGTGAGCAGGAGGTGGACAGTGACAAGCAGCAGCTGCCACTCACGCTTTCCCTGTCGCTCCGGGGTGGTGGCGACAATGGCGGCGGCGGCGGCGCAGAAGCCGCCG-GGAGGTTAGAGGAAGAGATGACAGGTAGCAGCAGTAGCAAGAAGGCCGCTCTGGGGCTGAGTACTTTGGATCTGACCATGTCGATCAAGGCATTGGAGTGAGATCTTTCAAGTACTTGTCCCAAGGCCTTCCAAGACATGCACACTGCACCATGAGATTAATTATTAATAAGACTGTTAATTTTGTTTAACCATGCTTCCAGACCATATATAATACATATATATCTTATGTTCAAAAAAA]

[+] EMBL AK073606             [CCCTCCCTTATTCTCCCATCACACTCTCCTCCTCTTCTTCCTCCCTGGTTCCTAACTCCTCTACCCCACATCATTCCAATCCTATCATGGTGGTGGTAGAGAAATATAGAGAGAGCTAGAAGGGGAAGAGAAGAGAGAAGATTTCTAGCTTAATTAGAAGGGTTGTTACTATGGGGGAGGTGAAGGAGAATGAGGTGGTAGAGATTTTTGAGCATGATCATGACAACAAGATCAGATCTCCTGAAAACTCTGTGCCACCAGCCATGGTGCTGGACCTCAACGAGGGCTTCGGCGAGGGCAGCGAGGAAGGGGGAGTTGGCGAAGACGGAGATGAAGAAGACGATGATGAGGACGACGACGACGACGACGATGACGATGGCGGTAGCACAAGCGAAGTTGCCGGAGGAGGGAGGAGCTCCAGCAACAACAGCAGCACCAACCACAATTCCGGGAGCGACAAGGACCATGACATGAACAGCAGCAGCAGCAAGGCCGACGGCGGCGGCGACAGGGTGCCGACGGTGCGGCAGTACAACCGGTCTAAGCTCCCCCGGCTCCGGTGGACGCCCGACCTCCACATGGCGTTCGTCCACGCCGTCGAGAGGTTGGGCGGCCAAGAAAGAGCAACACCAAAGCTTGTGCTTCAGATGATGAATGTGAGGGGGCTCAGCATTGCTCATGTCAAAAGCCATTTGCAGATGTACAGAAGCAAAAAGCTAGACCACGAGTCTGGCCACGAGAGAGGAGCCATCTCATCAGTGTTTTCGCCCATGGAGTTCCACATGAGGAGAGGGGACCATCGTTTCCACCACCACGACATGTTCTTCCAGCGAGCCGCCGCCGCTGGCGTCTCGCCGTTCTCCTCCAGGATGCTGCACGAGAACGGCGGCGGGTTCTTCGCTTCGAGGAATCCCGGCTTGCCGGAGTCCAGCCGGCTCTACGGTCTCTTCCAACGCCGGCAGCAAGCTCCCATGCAAAAATTCGACTTCAAGAACTGCAATAGCTTCAGTAGGAACCAGGAGTGGGCGTTCAACCAGCAGCACGCGGCGGCGAGGGCCGCCGGCGCCGTCAACGGCCACGGCCCGGCGAAAGGGCTCATCCACGAGATGATCTTCCGGAAGGAAGGAAAGCCGACGTCGCATCTGTTCGACGTGAGGGACGCCATCGCCTCCACCCGGGTGACCTCGGCGACCACGGCCGCCGCCGCCGACCACCGGCTAGACGGCGCCGGGAAGGCCGGCAACTTTGATTGGATCGGGAGCAGCTCCTCCCGGCCGCTCACGAGGACAATGTCAGCGGCGGCGGCGGCTACCATGGGCGACCACCACCATCTTCGGTGGCGAGGCGGCGCCGCCGGCAGCGGGAACACGACGGCGTCGTCGGATCCGGTGGTCGCAAGCGAAGCTGCCCTAGGTTCCCTGCTCGAGAGGGCAAAGACGAAAGCGACCGAGGCGATGCGCCTCGAGACGCCGGTGAAGATGACGGCGGCGGCGGTGGCGGCGGAGGAGATCAACGGCAGGACGCCGGACTTGCAGCTGAGTTTGAGCCCGAACGCGGGAGATCACAGATCAGCCGGCGAGAAGAGGAAGTTCTTGAGTGAGCAGGAGGTGGACAGTGACAAGCAGCAGCTGCCACTCACGCTTTCCCTGTCGCTCCGGGGTGGTGGCGACAATGGCGGCGGCGGCGGCGCAGAAGCCGCCG GGAGGTTAGAGGAAGAGATGACAGGTAGCAGCAGTAGCAAGAAGGCCGCTCTGGGGCTGAGTACTTTGGATCTGACCATGTCGATCAAGGCATTGGAGTGAGATCTTTCAAGTACTTGTCCCAAGGCCTTCCAAGACATGCACACTGCACCATGAGATTAATTATTAATAAGACTGTTAATTTTGTTTAACCATGCTTCCAGACCATATATAATACATATATA                 ]
[+] EMBL AU070170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAAGCAGCAGCTGCCACTCACGCTTTCCCTGTCGCTCCGGGGTGGTGGCGACAATGGCGGNGGCGGCGGCGCAGAAGCCGCGGNGNAGGTTAGAGGAAGAGATGACAGGTAGCAGCAGTAGCAAGAAGGCCGCTCTGGGGCTGAGTACTTTGGATCTGACCATGTCGATCAAGGCATTGGAGTNAGATCTTTCAAGTACTTGTCCCAAGGCCTTCCAAGACATGCACACTGCACCATGAGATTAATTATTAATAAGACTGTTAATTTTGTTTAACCATGCTTCCAGACCATATATAATACATATATATCTTATGTTCAAAAAAA]


>consensus_3430#0 CCCTCCCTTATTCTCCCATCACACTCTCCTCCTCTTCTTCCTCCCTGGTTCCTAACTCCT CTACCCCACATCATTCCAATCCTATCATGGTGGTGGTAGAGAAATATAGAGAGAGCTAGA AGGGGAAGAGAAGAGAGAAGATTTCTAGCTTAATTAGAAGGGTTGTTACTATGGGGGAGG TGAAGGAGAATGAGGTGGTAGAGATTTTTGAGCATGATCATGACAACAAGATCAGATCTC CTGAAAACTCTGTGCCACCAGCCATGGTGCTGGACCTCAACGAGGGCTTCGGCGAGGGCA GCGAGGAAGGGGGAGTTGGCGAAGACGGAGATGAAGAAGACGATGATGAGGACGACGACG ACGACGACGATGACGATGGCGGTAGCACAAGCGAAGTTGCCGGAGGAGGGAGGAGCTCCA GCAACAACAGCAGCACCAACCACAATTCCGGGAGCGACAAGGACCATGACATGAACAGCA GCAGCAGCAAGGCCGACGGCGGCGGCGACAGGGTGCCGACGGTGCGGCAGTACAACCGGT CTAAGCTCCCCCGGCTCCGGTGGACGCCCGACCTCCACATGGCGTTCGTCCACGCCGTCG AGAGGTTGGGCGGCCAAGAAAGAGCAACACCAAAGCTTGTGCTTCAGATGATGAATGTGA GGGGGCTCAGCATTGCTCATGTCAAAAGCCATTTGCAGATGTACAGAAGCAAAAAGCTAG ACCACGAGTCTGGCCACGAGAGAGGAGCCATCTCATCAGTGTTTTCGCCCATGGAGTTCC ACATGAGGAGAGGGGACCATCGTTTCCACCACCACGACATGTTCTTCCAGCGAGCCGCCG CCGCTGGCGTCTCGCCGTTCTCCTCCAGGATGCTGCACGAGAACGGCGGCGGGTTCTTCG CTTCGAGGAATCCCGGCTTGCCGGAGTCCAGCCGGCTCTACGGTCTCTTCCAACGCCGGC AGCAAGCTCCCATGCAAAAATTCGACTTCAAGAACTGCAATAGCTTCAGTAGGAACCAGG AGTGGGCGTTCAACCAGCAGCACGCGGCGGCGAGGGCCGCCGGCGCCGTCAACGGCCACG GCCCGGCGAAAGGGCTCATCCACGAGATGATCTTCCGGAAGGAAGGAAAGCCGACGTCGC ATCTGTTCGACGTGAGGGACGCCATCGCCTCCACCCGGGTGACCTCGGCGACCACGGCCG CCGCCGCCGACCACCGGCTAGACGGCGCCGGGAAGGCCGGCAACTTTGATTGGATCGGGA GCAGCTCCTCCCGGCCGCTCACGAGGACAATGTCAGCGGCGGCGGCGGCTACCATGGGCG ACCACCACCATCTTCGGTGGCGAGGCGGCGCCGCCGGCAGCGGGAACACGACGGCGTCGT CGGATCCGGTGGTCGCAAGCGAAGCTGCCCTAGGTTCCCTGCTCGAGAGGGCAAAGACGA AAGCGACCGAGGCGATGCGCCTCGAGACGCCGGTGAAGATGACGGCGGCGGCGGTGGCGG CGGAGGAGATCAACGGCAGGACGCCGGACTTGCAGCTGAGTTTGAGCCCGAACGCGGGAG ATCACAGATCAGCCGGCGAGAAGAGGAAGTTCTTGAGTGAGCAGGAGGTGGACAGTGACA AGCAGCAGCTGCCACTCACGCTTTCCCTGTCGCTCCGGGGTGGTGGCGACAATGGCGGCG GCGGCGGCGCAGAAGCCGCCGGGAGGTTAGAGGAAGAGATGACAGGTAGCAGCAGTAGCA AGAAGGCCGCTCTGGGGCTGAGTACTTTGGATCTGACCATGTCGATCAAGGCATTGGAGT GAGATCTTTCAAGTACTTGTCCCAAGGCCTTCCAAGACATGCACACTGCACCATGAGATT AATTATTAATAAGACTGTTAATTTTGTTTAACCATGCTTCCAGACCATATATAATACATA TATATCTTATGTTCAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)