cluster # 3434

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3434 cluster # 3434 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3434#0 length = 380 sequences # 1

consensus_3434#1 length = 308 sequences # 1

consensusID : consensus_3434#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTTCGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTTGAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGATCACTGGACTGTTGGAGCAT]

[+] EMBL CA998420             [GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTTCGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTTGAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGATCACTGGACTGTTGGAGCAT]




>consensus_3434#0
GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTT
CGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTT
GAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTT
CTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCT
GCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCAC
GGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGA
TCACTGGACTGTTGGAGCAT

consensusID : consensus_3434#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTATCTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCTTTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTTTTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAATCACGGGT]

[+] EMBL CA998356             [TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTATCTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCTTTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTTTTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAATCACGGGT]




>consensus_3434#1
TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTAT
CTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCT
TTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTT
TTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGG
AGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAA
TCACGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3434#0      GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTT 60
consensus_3434#1      TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTAT 60
                        *********************************** ***************** ** *

consensus_3434#0      CGTATAAG-ATTTCTAA-TAATCAGTATAGGCATTT-TTGTTTCTGGTTTTGGATTATCT 117
consensus_3434#1      CTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCT 120
                      *  ****  ******** ******* ********** ********** * **********

consensus_3434#0      TTT-GAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTT 176
consensus_3434#1      TTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTT 180
                      *** ** ************** * ** ***  *  ****** ******************

consensus_3434#0      TTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGG 236
consensus_3434#1      TTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGG 240
                      *** ********** ** ************************ *****************

consensus_3434#0      AGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAA 296
consensus_3434#1      AGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAA 300
                      **************** * *******************  ********************

consensus_3434#0      TCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGAT 356
consensus_3434#1      TCACGGGT---------------------------------------------------- 308
                      ****** *                                                    

consensus_3434#0      TGGATCACTGGACTGTTGGAGCAT 380
consensus_3434#1      ------------------------