cluster # 3437

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Oryza sativa
cluster # 3437 cluster # 3437 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3437#0 length = 312 sequences # 1

consensus_3437#1 length = 207 sequences # 1

consensusID : consensus_3437#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [TATCGCAATACCGCAAACATGGGTAAGGGACAACCTAGAGGTCTTTTGGCCGCGCGCAAGCTTCGCAACACCCGTCGTGAGAACCAGTGGGCCGATCTCCACTACAAGAAGAGACTGTTGGGCACAGCCTTCAAGTCTTCTCCCTTCGGTGGGTTCCTCCCACGCCAAGGGCATCGTCCTCGAGAAGGTCGGTGGTTGAGGCCANGCAGCCCAACTTNTGCCTTTNNCAAGNGNGTGCCGNGGGCAGCTTATTAAGAACNGGAAGGAAGGTCCCCCGGTTTTNGNCCCCCNAAGGANGGGTNTGTTTGGANC]

[+] EMBL CB096342             [TATCGCAATACCGCAAACATGGGTAAGGGACAACCTAGAGGTCTTTTGGCCGCGCGCAAGCTTCGCAACACCCGTCGTGAGAACCAGTGGGCCGATCTCCACTACAAGAAGAGACTGTTGGGCACAGCCTTCAAGTCTTCTCCCTTCGGTGGGTTCCTCCCACGCCAAGGGCATCGTCCTCGAGAAGGTCGGTGGTTGAGGCCANGCAGCCCAACTTNTGCCTTTNNCAAGNGNGTGCCGNGGGCAGCTTATTAAGAACNGGAAGGAAGGTCCCCCGGTTTTNGNCCCCCNAAGGANGGGTNTGTTTGGANC]




>consensus_3437#0
TATCGCAATACCGCAAACATGGGTAAGGGACAACCTAGAGGTCTTTTGGCCGCGCGCAAG
CTTCGCAACACCCGTCGTGAGAACCAGTGGGCCGATCTCCACTACAAGAAGAGACTGTTG
GGCACAGCCTTCAAGTCTTCTCCCTTCGGTGGGTTCCTCCCACGCCAAGGGCATCGTCCT
CGAGAAGGTCGGTGGTTGAGGCCANGCAGCCCAACTTNTGCCTTTNNCAAGNGNGTGCCG
NGGGCAGCTTATTAAGAACNGGAAGGAAGGTCCCCCGGTTTTNGNCCCCCNAAGGANGGG
TNTGTTTGGANC

consensusID : consensus_3437#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence

                              [CCGCAAGGATCAGAAATGGGCTGATCTTCACTACAAGAAGCGTGCCTTGGGTACCGCTTTCAAGTCTTCTCCCTTCGGTGGTTCCTCGCACGCCAAGGGCATCGTCCTCGAGAACGTCCGTGTTGAGGCCAAGCAGCCCAACTCTGCCATTCGCAAGTGTGTCCGTGTTCGTTTTTTCTTTAACGGCAAGAAGGTCACCGCTTTCGT]

[+] EMBL CA998771             [CCGCAAGGATCAGAAATGGGCTGATCTTCACTACAAGAAGCGTGCCTTGGGTACCGCTTTCAAGTCTTCTCCCTTCGGTGGTTCCTCGCACGCCAAGGGCATCGTCCTCGAGAACGTCCGTGTTGAGGCCAAGCAGCCCAACTCTGCCATTCGCAAGTGTGTCCGTGTTCGTTTTTTCTTTAACGGCAAGAAGGTCACCGCTTTCGT]




>consensus_3437#1
CCGCAAGGATCAGAAATGGGCTGATCTTCACTACAAGAAGCGTGCCTTGGGTACCGCTTT
CAAGTCTTCTCCCTTCGGTGGTTCCTCGCACGCCAAGGGCATCGTCCTCGAGAACGTCCG
TGTTGAGGCCAAGCAGCCCAACTCTGCCATTCGCAAGTGTGTCCGTGTTCGTTTTTTCTT
TAACGGCAAGAAGGTCACCGCTTTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3437#0      TATCGCAATACCGCAAACATGGGTAAGGGACAACCTAGAGGTCTTTTGGCCGCGCGCAAG 60
consensus_3437#1      ------------------------------------------------------------
                                                                                  

consensus_3437#0      CTTCGCAACACCCGTCGTGAGAACCAGTGGGCCGATCTCCACTACAAGAAGAGACTGTTG 120
consensus_3437#1      -----------CCGCAAGGATCAGAAATGGGCTGATCTTCACTACAAGAAGCGTGCCTTG 49
                                 ***    **  *  * ***** ***** ************ *    ***

consensus_3437#0      GGCACAGCCTTCAAGTCTTCTCCCTTCGGTGGGTTCCTCCCACGCCAAGGGCATCGTCCT 180
consensus_3437#1      GGTACCGCTTTCAAGTCTTCTCCCTTCGGTGG-TTCCTCGCACGCCAAGGGCATCGTCCT 108
                      ** ** ** *********************** ****** ********************

consensus_3437#0      CGAGAAGGTCGGTGGTTGAGGCCANGCAGCCCAACTTNTGCCTTTNNCAAGNGNGTGCCG 240
consensus_3437#1      CGAGAACGTCCGTG-TTGAGGCCAAGCAGCCCAACT-CTGCCATTCGCAAGTGTGT-CCG 165
                      ****** *** *** ********* ***********  **** **  **** * ** ***

consensus_3437#0      NGGGCAGCTTATTAAGAACNGGAAGGAAGGTCCCCCGGTTTTNGNCCCCCNAAGGANGGG 300
consensus_3437#1      TGTTCGTTTTTTCTTTAACGGCAAG-AAGGTCACC--GCTTTCGT--------------- 207
                       *  *   ** *    *** * *** ****** **  * *** *                

consensus_3437#0      TNTGTTTGGANC 312
consensus_3437#1      ------------