These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1394 fasta sequence [CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATGGTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGATCCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCTGCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGACGACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATGTTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATCCGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCCGCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGCGGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGCTCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCCTCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAGAAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGGTCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCTAAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATGATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAGATTTCCACTATTAG] [+] EMBL AK073603 [CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATGGTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGATCCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCTGCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGACGACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATGTTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATCCGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCCGCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGCGGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGCTCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCCTCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAGAAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGGTCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCTAAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATGATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAGATTTCCACTATTAG] consensusID : consensus_344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA] [+] EMBL CA753728 [GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_344#0 CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGC 60 consensus_344#1 ----GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGC 56 ******************************************************** consensus_344#0 GAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGG 120 consensus_344#1 GAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGG 116 ************************************************************ consensus_344#0 CTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCAT 180 consensus_344#1 CTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCAT 176 ************************************************************ consensus_344#0 GGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTG 240 consensus_344#1 GGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTG 236 ************************************************************ consensus_344#0 GCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGA 300 consensus_344#1 GCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGA 296 ************************************************************ consensus_344#0 GAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCT 360 consensus_344#1 GAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCT 356 ************************************************************ consensus_344#0 GCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCG 420 consensus_344#1 GCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCG 416 ************************************************************ consensus_344#0 CCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCAT 480 consensus_344#1 CCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCAT 476 ************************************************************ consensus_344#0 CTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATG 540 consensus_344#1 CTTGAATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA-------------- 522 ************************************ consensus_344#0 GTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGAT 600 consensus_344#1 ------------------------------------------------------------ consensus_344#0 CCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCT 660 consensus_344#1 ------------------------------------------------------------ consensus_344#0 GCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGAC 720 consensus_344#1 ------------------------------------------------------------ consensus_344#0 GACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATG 780 consensus_344#1 ------------------------------------------------------------ consensus_344#0 TTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATC 840 consensus_344#1 ------------------------------------------------------------ consensus_344#0 CGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCC 900 consensus_344#1 ------------------------------------------------------------ consensus_344#0 GCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGC 960 consensus_344#1 ------------------------------------------------------------ consensus_344#0 GGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGC 1020 consensus_344#1 ------------------------------------------------------------ consensus_344#0 TCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCC 1080 consensus_344#1 ------------------------------------------------------------ consensus_344#0 TCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAG 1140 consensus_344#1 ------------------------------------------------------------ consensus_344#0 AAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGG 1200 consensus_344#1 ------------------------------------------------------------ consensus_344#0 TCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCT 1260 consensus_344#1 ------------------------------------------------------------ consensus_344#0 AAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATG 1320 consensus_344#1 ------------------------------------------------------------ consensus_344#0 ATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAG 1380 consensus_344#1 ------------------------------------------------------------ consensus_344#0 ATTTCCACTATTAG 1394 consensus_344#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||