cluster # 3442

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Oryza sativa
cluster # 3442 cluster # 3442 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3442#0 length = 594 sequences # 1

consensus_3442#1 length = 245 sequences # 1

consensusID : consensus_3442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCACAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCTGACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCTGGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGCCTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTAAAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCTAATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCTGTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAGCAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA]

[+] EMBL CA998919             [GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCACAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCTGACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCTGGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGCCTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTAAAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCTAATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCTGTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAGCAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA]




>consensus_3442#0
GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCA
CAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCT
GACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCT
GGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGC
CTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTA
AAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCT
AATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATA
GCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCT
GTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAG
CAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA

consensusID : consensus_3442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [ATGGATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCATTCAGAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTTGGCTAATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATCATCTG]

[+] EMBL CB000457             [ATGGATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCATTCAGAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTTGGCTAATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATCATCTG]




>consensus_3442#1
ATGGATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCA
TTCAGAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTT
GGCTAATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAA
CATAGCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATC
ATCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3442#0      GCTGAATTGCAGCGACTTCGTTCAATATTTGCTACAAGTGACAGACAGTGGATTGTGGCA 60
consensus_3442#1      ------------------------------------------------------------
                                                                                  

consensus_3442#0      CAAGTTGAAAATGCTAAACAACAGGCCATACTCTCGATTTTAAAATCACAAGTGTCATCT 120
consensus_3442#1      ------------------------------------------------------------
                                                                                  

consensus_3442#0      GACGAGGCTCATATACATAGGGATATTCATTCTCTTAGGAGAAAAGGTTCTGAGCTTGCT 180
consensus_3442#1      ------------------------------------------------------------
                                                                                  

consensus_3442#0      GGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCTTTTGTATCTGAGACTATACCATGC 240
consensus_3442#1      --------------------------------------------------------ATGG 4
                                                                              *** 

consensus_3442#0      CTCTGCTCAGAACTCGCTCAACTTCAATTTACATATATTTTGCAAGGGGACTACGATTTA 300
consensus_3442#1      ATCTACTCAAAGCTCCCTCAACTTCATGGATCATATGTTTAGCGCGGGGACTACCATTCA 64
                       *** **** * *** **********     ***** *** **  ********* *** *

consensus_3442#0      AAGGTCATGCGCCAGGAATACTACATTAACAGGCAAAAAACGTTCATCAGTCACTTGGCT 360
consensus_3442#1      GAGGGAAGGCGCCAGGAATACTACATTATCAGGCAAAAAACGTACATCAATCACTTGGCT 124
                       ***  * ******************** ************** ***** **********

consensus_3442#0      AATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCTTGCCAGCTTGAAAGGAAAAACATA 420
consensus_3442#1      AATCGGCTACCCAGACACCAATTTCTGAAGATTGCTTGCCAGCTAGAAAGGAAAAACATA 184
                      **** **** ********** *********************** ***************

consensus_3442#0      GCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCCGAGTTGCAAAGCTACCTATCAGCT 480
consensus_3442#1      GCTAGCGCCTATTCACTGCTTAGAGTAGTACAATCCGAGTTGCAAAGCTACCTATCATCT 244
                      *************************** ** ************************** **

consensus_3442#0      GTCAATACCCGTTTGGGCCATTGTACTTCATTAATTCAAGCTGCGACCGATGTGCGTGAG 540
consensus_3442#1      G----------------------------------------------------------- 245
                      *                                                           

consensus_3442#0      CAAGGTGCAATTGATGACCGTGACACTCTCCTCCATGCCGTACGGGATCTCTTA 594
consensus_3442#1      ------------------------------------------------------