cluster # 3450

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3450 cluster # 3450 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3450#0 length = 385 sequences # 1

consensus_3450#1 length = 376 sequences # 1

consensusID : consensus_3450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCGCCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCAGCTGCGAGCACCTTGCTTAGTCCTTACCGAACCAGGTGTTGTAACCGAGGACCTTGCGGCTCGCCATGTAGATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCAAGTTGCTGCCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGCGCTGGTGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGTGAGGAGTGGAGTGGTTGTTTCGGGGAGGTA]

[+] EMBL BI306459             [ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCGCCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCAGCTGCGAGCACCTTGCTTAGTCCTTACCGAACCAGGTGTTGTAACCGAGGACCTTGCGGCTCGCCATGTAGATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCAAGTTGCTGCCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGCGCTGGTGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGTGAGGAGTGGAGTGGTTGTTTCGGGGAGGTA]




>consensus_3450#0
ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCG
CCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCAGCTGCGAGCAC
CTTGCTTAGTCCTTACCGAACCAGGTGTTGTAACCGAGGACCTTGCGGCTCGCCATGTAG
ATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCAAGTTGCTG
CCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGCGCTGG
TGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGTGAGGA
GTGGAGTGGTTGTTTCGGGGAGGTA

consensusID : consensus_3450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCGTGCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCACCTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCATGTACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAATTGATGCCAGGCTTGATCCTGCAAAGCCGGTGTGGGCACTATACGCTTGCTGGCTTAATCGCTGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGAGACGAGTGGAGTGGTATC]

[+] EMBL BI305941             [GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCGTGCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCACCTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCATGTACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAATTGATGCCAGGCTTGATCCTGCAAAGCCGGTGTGGGCACTATACGCTTGCTGGCTTAATCGCTGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGAGACGAGTGGAGTGGTATC]




>consensus_3450#1
GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCGT
GCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCAC
CTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCATG
TACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAATT
GATGCCAGGCTTGATCCTGCAAAGCCGGTGTGGGCACTATACGCTTGCTGGCTTAATCGC
TGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGAGA
CGAGTGGAGTGGTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3450#0      ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCG 60
consensus_3450#1      -GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCG 59
                        * ***************  *** **** ** ******* *******************

consensus_3450#0      CCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCA-GCTGCGAGCA 119
consensus_3450#1      TGCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCA 119
                         ******* ******  **  **** *** ***************** **** *****

consensus_3450#0      CCTTGCTTAGTCCTTACCGAACCAGGTG-TTGTA-ACCGAGGAC-CTTGCGGCTCGCCAT 176
consensus_3450#1      CCTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCAT 179
                      ************************ *** ***   ********* ***** ****  ***

consensus_3450#0      GTAGATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCA-AGT 235
consensus_3450#1      GTACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAAT 239
                      *** ******* *** *********************** **************** * *

consensus_3450#0      TGCTGCCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGC 295
consensus_3450#1      TGATGCCAGGCTTGATCCTGCAAA-GCCGGTGTGGGCACTATACGCTTGCTGGCTTAATC 298
                      ** **************** ** * ** ********* * *** *********   ** *

consensus_3450#0      GCTGGTGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGT 355
consensus_3450#1      GCTGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGA 358
                      ********** ******************* *** ******* *** **** *  * ** 

consensus_3450#0      GAGGAGTGGAGTGGTTGTTTCGGGGAGGTA 385
consensus_3450#1      GACGAGTGGAGTGGTATC------------ 376
                      ** ************