These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTTCGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCGGTCGCGGCCGCCGCGGCGTCGCGCGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGCAGGACACGCT] [+] EMBL CF320837 [TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTTCGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCGGTCGCGGCCGCCGCGGCGTCGCGCGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGCAGGACACGCT] consensusID : consensus_3454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGCCACGAACACGCAGAGCGCGACGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC] [+] EMBL CF320836 [TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGCCACGAACACGCAGAGCGCGACGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3454#0 TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATT 60 consensus_3454#1 --TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATT 58 ********************************************************** consensus_3454#0 ACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACA 120 consensus_3454#1 ACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACA 118 ************************************************************ consensus_3454#0 ATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGC 180 consensus_3454#1 ATTCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGC 178 *********************** ****** **************************** consensus_3454#0 ACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAG 240 consensus_3454#1 ACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAG 238 ************************************************************ consensus_3454#0 CCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAG 300 consensus_3454#1 CCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAG 298 ************************************************************ consensus_3454#0 GTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTT 360 consensus_3454#1 GTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGC 358 ******************************************* * * ** * consensus_3454#0 CGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCG-GTCGCGGCCGCCGCGGCGTCGC 419 consensus_3454#1 CACGAACACGCAGAGCGCGA-----CGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC 413 * * ** ** ** *** * * ** ** * **** * **** * * consensus_3454#0 GCGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGC 479 consensus_3454#1 ------------------------------------------------------------ consensus_3454#0 AGGACACGCT 489 consensus_3454#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||