cluster # 3455

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Oryza sativa
cluster # 3455 cluster # 3455 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3455#0 length = 607 sequences # 1

consensus_3455#1 length = 432 sequences # 1

consensusID : consensus_3455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCGATAAAAA]

[+] EMBL AK111133             [GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCGATAAAAA]




>consensus_3455#0
GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGC
GCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGG
CGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCG
GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCC
TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG
TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT
TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAAC
CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT
CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC
ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCG
ATAAAAA

consensusID : consensus_3455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA]

[+] EMBL AU174006             [GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA]




>consensus_3455#1
GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTG
CGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGC
GGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCAC
GTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTT
CNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATT
ACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATT
TAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3455#0      GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGC 60
consensus_3455#1      ------------------------------------------------------------
                                                                                  

consensus_3455#0      GCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGG 120
consensus_3455#1      ------------------------------------------------------------
                                                                                  

consensus_3455#0      CGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCG 180
consensus_3455#1      ----------------------------------------GCTGCCGCTGCTGGCCGGCG 20
                                                              ********************

consensus_3455#0      GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCC 240
consensus_3455#1      GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCC 80
                      ****************************** ********************* *******

consensus_3455#0      TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG 300
consensus_3455#1      TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG 140
                      ************************************************************

consensus_3455#0      TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT 360
consensus_3455#1      TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT 200
                      ************************************************************

consensus_3455#0      TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAAC 420
consensus_3455#1      TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAAC 260
                      ***************************************** ******************

consensus_3455#0      CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT 480
consensus_3455#1      CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT 320
                      ************************************************************

consensus_3455#0      CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC 540
consensus_3455#1      CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC 380
                      ************************************************************

consensus_3455#0      ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCG 600
consensus_3455#1      ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA-------- 432
                      ****************************************   ** *  *          

consensus_3455#0      ATAAAAA 607
consensus_3455#1      -------