These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCCCCCTTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAATTTGGGGGGTAAAAACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAGACCTTTAAAAAAAAAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAAACAAAGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTTTTTTGGGTTTTTAACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAATTCCCCCCCCCGGAGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA] [+] EMBL CF299604 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCCCCCTTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAATTTGGGGGGTAAAAACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAGACCTTTAAAAAAAAAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAAACAAAGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTTTTTTGGGTTTTTAACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAATTCCCCCCCCCGGAGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA] consensusID : consensus_3458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAATTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGGTCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAAACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG] [+] EMBL CF300633 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAATTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGGTCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAAACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3458#0 ---------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-- 49 consensus_3458#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 60 ************************************************* consensus_3458#0 --GGAACCCCCCCTTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAA 107 consensus_3458#1 CGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAA 120 **** ****** ******** **** *************** ** **** **** consensus_3458#0 TTTGGGGGGTAAAAACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAG 167 consensus_3458#1 TTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGG 180 ********* ********** **** **** *** *********** ********* * consensus_3458#0 ACCTTTAAAAAAAAAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAA 227 consensus_3458#1 TCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAA 240 ****************** ****** ******************** ************ consensus_3458#0 ACAAAGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTT 287 consensus_3458#1 ACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG------------------------- 275 ********* ************ ******* **** consensus_3458#0 TTTTGGGTTTTTAACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAA 347 consensus_3458#1 ------------------------------------------------------------ consensus_3458#0 TTCCCCCCCCCGGAGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA 398 consensus_3458#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||