cluster # 3460

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Oryza sativa
cluster # 3460 cluster # 3460 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3460#0 length = 210 sequences # 1

consensus_3460#1 length = 189 sequences # 1

consensusID : consensus_3460#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGGAACAAATTTTTTTTGGACTTTTCCCCAATGTTTGTAATACAAAAAAAATAATTTTAAGTCCCTGGGGACCCAAAAAAGGGGTTTTTTTTCTTTTACCCAATTGAAATTATGGGCTTTTAAAATTTTTACCCCTTCAACCCCT]

[+] EMBL CF321559             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGGAACAAATTTTTTTTGGACTTTTCCCCAATGTTTGTAATACAAAAAAAATAATTTTAAGTCCCTGGGGACCCAAAAAAGGGGTTTTTTTTCTTTTACCCAATTGAAATTATGGGCTTTTAAAATTTTTACCCCTTCAACCCCT]




>consensus_3460#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TGAAAGGGAACAAATTTTTTTTGGACTTTTCCCCAATGTTTGTAATACAAAAAAAATAAT
TTTAAGTCCCTGGGGACCCAAAAAAGGGGTTTTTTTTCTTTTACCCAATTGAAATTATGG
GCTTTTAAAATTTTTACCCCTTCAACCCCT

consensusID : consensus_3460#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAAGGGGACCAATTTTTTTTGGGCTTTTCCCCAATGTTTGTTATACAAAAAAAATAATTTTAAGTCCCTGGGGCCCCAAAAAAGGGGGTTTAATCCTTTTACCCAAGGGAAAATATGGGCTTTTATAAT]

[+] EMBL CF321001             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAAGGGGACCAATTTTTTTTGGGCTTTTCCCCAATGTTTGTTATACAAAAAAAATAATTTTAAGTCCCTGGGGCCCCAAAAAAGGGGGTTTAATCCTTTTACCCAAGGGAAAATATGGGCTTTTATAAT]




>consensus_3460#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTG
AAAGGGGACCAATTTTTTTTGGGCTTTTCCCCAATGTTTGTTATACAAAAAAAATAATTT
TAAGTCCCTGGGGCCCCAAAAAAGGGGGTTTAATCCTTTTACCCAAGGGAAAATATGGGC
TTTTATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3460#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_3460#1      --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 58
                        ********************************************************  

consensus_3460#0      TGAAAGGGAACAAATTTTTTTTGGACTTTTCCCCAATGTTTGTAATACAAAAAAAATAAT 120
consensus_3460#1      TGAAAGGGGACCAATTTTTTTTGGGCTTTTCCCCAATGTTTGTTATACAAAAAAAATAAT 118
                      ******** ** ************ ****************** ****************

consensus_3460#0      TTTAAGTCCCTGGGGACCCAAAAAAGGGGTTTTTTTTCTTTTACCCAATTGAAATTATGG 180
consensus_3460#1      TTTAAGTCCCTGGGGCCCCAAAAAAGGGGGTTTAATCCTTTTACCCAAGGGAAAATATGG 178
                      *************** ************* ***  * ***********  **** *****

consensus_3460#0      GCTTTTAAAATTTTTACCCCTTCAACCCCT 210
consensus_3460#1      GCTTTTATAAT------------------- 189
                      ******* ***