These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [GCGGCTCGGCTAGGGTTCCGGCCGGGCGACGGCTCGCCGAGGACGACGAGTCCGACAGGTGGGACCCACCTGTCAGCGGCCGAGCGCGCGCGCGGGCGGCTGCGGGCTGACTGGGCTGAAGAGGAGAGAGAGGGAAGGTTTTGGGCCGAAGCCAAAAGAGGATTTTAAAAACCTTTTTCAATTTAAATTATTCATTAAATGCAATTCCATTTATTAAAAATACTTCCTTAACTCAAATAATTCCCACAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGGCCCCATTTTATATTGGAATTTATTAATTAAAACTAGATCTTCTCTTTTAGGCTTTTAAAATAAAT] [+] EMBL CB000559 [GCGGCTCGGCTAGGGTTCCGGCCGGGCGACGGCTCGCCGAGGACGACGAGTCCGACAGGTGGGACCCACCTGTCAGCGGCCGAGCGCGCGCGCGGGCGGCTGCGGGCTGACTGGGCTGAAGAGGAGAGAGAGGGAAGGTTTTGGGCCGAAGCCAAAAGAGGATTTTAAAAACCTTTTTCAATTTAAATTATTCATTAAATGCAATTCCATTTATTAAAAATACTTCCTTAACTCAAATAATTCCCACAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGGCCCCATTTTATATTGGAATTTATTAATTAAAACTAGATCTTCTCTTTTAGGCTTTTAAAATAAAT] consensusID : consensus_3469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [CATGGATTGAAGGAGTAGTTTATTTATTAATACTAAAATCCCTGATCAGCGAGTCTCTTGTTGCTATGTCACACCCTAAAAATCTCAAAAGTATAAATTGTTGTTTAATTGGAATTATTAGAATTTATTGTAAAAGCCTAAAAGAGAAGATCTAATTTTAATTAATAAATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315498 [CATGGATTGAAGGAGTAGTTTATTTATTAATACTAAAATCCCTGATCAGCGAGTCTCTTGTTGCTATGTCACACCCTAAAAATCTCAAAAGTATAAATTGTTGTTTAATTGGAATTATTAGAATTTATTGTAAAAGCCTAAAAGAGAAGATCTAATTTTAATTAATAAATTCCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3469#0 GCGGCTCGGCTAGGGTTCCGGCCGGGCGACGGCTCGCCGAGGACGACGAGTCCGACAGGT 60 consensus_3469#1 --------------------------------------------CATGGATTGAAGGAGT 16 * * * * ** consensus_3469#0 GGGACCCACCTGTCAGCGGCCGAGCGCGCGCGCGGGCGGCTGCGGGCTGACTGGGCTGAA 120 consensus_3469#1 AG--TTTATTTATTAATACTAAAATCCCTGATCAGCGAGTCTCTTGTTG-CTATGTCACA 73 * * * * * * * * * * * * * ** ** * * consensus_3469#0 GAGGAGAGAGAGGGAAGGTTTTGGGCCGAAGCCAAAAGAGGATTTTAAAAACCTTTTTCA 180 consensus_3469#1 CCCTAAAAATCTCAAAAGTAT-AAATTGTTGTTTAATTGGAATTATTAGAATTTATTGTA 132 * * * ** ** * * * ** * *** * * ** * ** * consensus_3469#0 ATTTAAATTATTCATTAAATGCAATTCCATTTATTAAAAATACTTCCTTAACTCAAATAA 240 consensus_3469#1 AAA-GCCTAAAAGAGAAGATCTAATTTTAATTAATAAATTCCAATAAAAAAAAAAAAAAA 191 * * * * * ** **** * *** **** * ** *** ** consensus_3469#0 TTCCCACAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGG 300 consensus_3469#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 251 * ***** * ** * * ** ** *** * ** *** * consensus_3469#0 CCCCATTTTATATTGGAATTTATTAATTAAAACTAGATCTTCTCTTTTAGGCTTTTAAAA 360 consensus_3469#1 ------------------------------------------------------------ consensus_3469#0 TAAAT 365 consensus_3469#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||