cluster # 3479

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Oryza sativa
cluster # 3479 cluster # 3479 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3479#0 length = 504 sequences # 1

consensus_3479#1 length = 337 sequences # 1

consensusID : consensus_3479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCGAGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGTTTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATTAAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCCATGAGTTTGTGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTGATGTAAAATGGTTAATCTTTGAAAAAAA]

[+] EMBL BI804927             [GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCGAGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGTTTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATTAAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCCATGAGTTTGTGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTGATGTAAAATGGTTAATCTTTGAAAAAAA]




>consensus_3479#0
GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCG
AGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGT
TTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATT
AAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCT
CTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCCATGAGTTTG
TGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACT
GCATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGA
ATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTGATGT
AAAATGGTTAATCTTTGAAAAAAA

consensusID : consensus_3479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [CATTCTGATGCTGGAGCGGCCGCTAGGTTGTAGCAATTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGTTTGTGCATTTTTTTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCAATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTGATGTAAAATGGTTAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA]

[-] EMBL BI305883             [CATTCTGATGCTGGAGCGGCCGCTAGGTTGTAGCAATTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGTTTGTGCATTTTTTTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCAATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTGATGTAAAATGGTTAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA]




>consensus_3479#1
CATTCTGATGCTGGAGCGGCCGCTAGGTTGTAGCAATTGTACAGCGCTCTTGATTTGTTC
CCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGTTTGTGCATTTTT
TTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCAATGCAA
CTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTC
TCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTGATGTAAAATGGT
TAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3479#0      GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCG 60
consensus_3479#1      ------------------------------------------------------------
                                                                                  

consensus_3479#0      AGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGT 120
consensus_3479#1      ------------------------------------------------------------
                                                                                  

consensus_3479#0      TTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATT 180
consensus_3479#1      ------------------------------------------------------------
                                                                                  

consensus_3479#0      AAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCT 240
consensus_3479#1      -------CATTCTGAT-GCTGGA-GCGGCCGCTAGGTTGTA---GCAATTGTACAGCGCT 48
                               ** ****  ***   **     *** ** ***   * * ************

consensus_3479#0      CTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCC---ATGAGT 297
consensus_3479#1      CTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGT 108
                      *********************************************** ***   ******

consensus_3479#0      TTGTGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGG 357
consensus_3479#1      TTGTGCATTTTTTTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGG 168
                      ************* **********************************************

consensus_3479#0      ACTGCA-TGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGG 416
consensus_3479#1      ACTGCAATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGG 228
                      ****** *****************************************************

consensus_3479#0      CTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTG 476
consensus_3479#1      CTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTG 288
                      ************************************************** *********

consensus_3479#0      ATGTAAAATGGTTAATCTTTGAAAAAAA--------------------- 504
consensus_3479#1      ATGTAAAATGGTTAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA 337
                      **************** **  * **