These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1377 fasta sequence [TAAGCCCACACAGCCCCAGACTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACCCACCAAGCAGCCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCACTCTCGGTCCCCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTCGCGGCGCCACCGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGAGAGGGAGGACCGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCCTTCTCGCCGAAGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGACGATGGTGGCGGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGTGGATTACTCGCGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGCAAAGATGAAGCTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCACTGTGGGGTGGGAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGATGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACTTTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATTTGGAGTACCTGCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAATGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGATAAAGTTCTGGCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAATCCAAATGCGTGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCCGGAATTCGTATAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACTTCGAAGCTGAACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTATTGCATTGCTTCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACCAGCTGCACTAAATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAGATGTATC] [+] EMBL AK106335 [TAAGCCCACACAGCCCCAGACTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACCCACCAAGCAGCCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCACTCTCGGTCCCCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTCGCGGCGCCACCGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGAGAGGGAGGACCGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCCTTCTCGCCGAAGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGACGATGGTGGCGGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGTGGATTACTCGCGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGCAAAGATGAAGCTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCACTGTGGGGTGGGAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGATGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACTTTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATTTGGAGTACCTGCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAATGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGATAAAGTTCTGGCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAATCCAAATGCGTGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCCGGAATTCGTATAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACTTCGAAGCTGAACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTATTGCATTGCTTCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACCAGCTGCACTAAATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAGATGTATC] consensusID : consensus_348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC] [+] EMBL AU225258 [GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_348#0 -----TAA-GCCCACACAGCCCCAGAC----TCGCCGGAAGCCATGGAGGAAGAGAAGGC 50 consensus_348#1 GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGC 60 ** * ** * * * * * * ***************************** consensus_348#0 GGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGG 110 consensus_348#1 GGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGG 120 ************************************************************ consensus_348#0 CCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCAC 170 consensus_348#1 CCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCAC 180 ************************************************************ consensus_348#0 CTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACC 230 consensus_348#1 CTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC- 239 *********************************************************** consensus_348#0 CACCAAGCAGCCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCA 290 consensus_348#1 ------------------------------------------------------------ consensus_348#0 CTCTCGGTCCCCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTC 350 consensus_348#1 ------------------------------------------------------------ consensus_348#0 GCGGCGCCACCGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGA 410 consensus_348#1 ------------------------------------------------------------ consensus_348#0 GAGGGAGGACCGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCC 470 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TTCTCGCCGAAGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGA 530 consensus_348#1 ------------------------------------------------------------ consensus_348#0 CGATGGTGGCGGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGT 590 consensus_348#1 ------------------------------------------------------------ consensus_348#0 GGATTACTCGCGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGC 650 consensus_348#1 ------------------------------------------------------------ consensus_348#0 AAAGATGAAGCTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCAC 710 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TGTGGGGTGGGAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGA 770 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACT 830 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATT 890 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TGGAGTACCTGCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAA 950 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGA 1010 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TAAAGTTCTGGCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAA 1070 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TCCAAATGCGTGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCC 1130 consensus_348#1 ------------------------------------------------------------ consensus_348#0 GGAATTCGTATAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACT 1190 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TCGAAGCTGAACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTA 1250 consensus_348#1 ------------------------------------------------------------ consensus_348#0 TTGCATTGCTTCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACC 1310 consensus_348#1 ------------------------------------------------------------ consensus_348#0 AGCTGCACTAAATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAG 1370 consensus_348#1 ------------------------------------------------------------ consensus_348#0 ATGTATC 1377 consensus_348#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||