Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3482 cluster # 3482       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3482#0 length = 689 sequences # 1  
consensus_3482#1 length = 462 sequences # 1  

consensusID : consensus_3482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence
                              [TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCAACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA]

[+] EMBL CA763201             [TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCAACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA]


>consensus_3482#0 TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTA TATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATT CATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACA CACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGA GATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAA GAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCT CCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCA ACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGA GTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAA CATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGC TTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCT TACGAATCAGTATGTTGCCGCCATGGCGA



consensusID : consensus_3482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence
                              [TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTTCTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT]

[-] EMBL BI800580             [TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTTCTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT]


>consensus_3482#1 TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATT CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC CTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCAC TTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAG TTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTAT CCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAAT GTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTT CTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3482#0      TTTTTTTTTTTTTCTTG---------GGGAGATATACACAATCCATTAATTTACAACATT 51
consensus_3482#1      TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATT 60
                      **********   * **         * ********************************

consensus_3482#0      CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC 111
consensus_3482#1      CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC 120
                      ************************************************************

consensus_3482#0      CTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCA 171
consensus_3482#1      CTTATTATTCATGGAGGCAATATCT-GACACAAAAGAGACTTACATTACTTACAAATTCA 179
                      ****************** ****** **********************************

consensus_3482#0      CTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATT-GAAA 230
consensus_3482#1      CTTATCACACACACTCGAAACCATAATTCACAGTCATCT-GAGGAGCATTTCATTTGAAG 238
                      *************************************** *************** *** 

consensus_3482#0      AGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCT 290
consensus_3482#1      AGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCT 298
                      ************************************************************

consensus_3482#0      ATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTT 350
consensus_3482#1      ATCCCAGGAAGAACAACATCATCTGC-TCTTCAACAATCTCTTCAATCTTGA--TTGGGT 355
                      ******************** ***** ***********************    **** *

consensus_3482#0      GTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCA 410
consensus_3482#1      GTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGA 415
                      ********************************************************** *

consensus_3482#0      CCCTTCTTCAACATCATGGTGCTTAGACGAAAAAC-ACGAACACACTTAGATGATGGTTC 469
consensus_3482#1      CCCTTCTTCAACATCATGG-GCTTAGACGAAAAACCACGAACACACTT------------ 462
                      ******************* *************** ************            

consensus_3482#0      ACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTC 529
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      CAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCA 589
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      GTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCC 649
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      ATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA 689
consensus_3482#1      ----------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)