These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCAACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA] [+] EMBL CA763201 [TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCAACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA] consensusID : consensus_3482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTTCTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT] [-] EMBL BI800580 [TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTTCTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3482#0 TTTTTTTTTTTTTCTTG---------GGGAGATATACACAATCCATTAATTTACAACATT 51 consensus_3482#1 TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATT 60 ********** * ** * ******************************** consensus_3482#0 CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC 111 consensus_3482#1 CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC 120 ************************************************************ consensus_3482#0 CTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCA 171 consensus_3482#1 CTTATTATTCATGGAGGCAATATCT-GACACAAAAGAGACTTACATTACTTACAAATTCA 179 ****************** ****** ********************************** consensus_3482#0 CTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATT-GAAA 230 consensus_3482#1 CTTATCACACACACTCGAAACCATAATTCACAGTCATCT-GAGGAGCATTTCATTTGAAG 238 *************************************** *************** *** consensus_3482#0 AGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCT 290 consensus_3482#1 AGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCT 298 ************************************************************ consensus_3482#0 ATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTT 350 consensus_3482#1 ATCCCAGGAAGAACAACATCATCTGC-TCTTCAACAATCTCTTCAATCTTGA--TTGGGT 355 ******************** ***** *********************** **** * consensus_3482#0 GTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCA 410 consensus_3482#1 GTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGA 415 ********************************************************** * consensus_3482#0 CCCTTCTTCAACATCATGGTGCTTAGACGAAAAAC-ACGAACACACTTAGATGATGGTTC 469 consensus_3482#1 CCCTTCTTCAACATCATGG-GCTTAGACGAAAAACCACGAACACACTT------------ 462 ******************* *************** ************ consensus_3482#0 ACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTC 529 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 CAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCA 589 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 GTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCC 649 consensus_3482#1 ------------------------------------------------------------ consensus_3482#0 ATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA 689 consensus_3482#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||