These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [TTTGTAAAATAAGTTTCCAANAGGACTNAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCNTGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGNTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATANTAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTNTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCANCCCAGCTCAAACATTTACTTTGTAAGTTATAGGGCCTTTAAGAAATATAACAAACTACTATATTTGNGATGGAATATANTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGNGGNAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAAGGTAATGCNTAGCATAAAGATACACTGTACCACAAATGCTACNCNAAGGATGCCAATTAATCTTACTTCAATGTTGCAAAACAGAGAGAGAAAAAGNCNGCNGTGCTTTTATTCCATTACCAGGGGCCAGCCANGTTAAGAANTCCTTGNCCATAGNCCTCCCAAAGCCAGCNTTNGAAGNATTTGACTGACCCATGCCTGCNGNNGTTTACCTTNNCAACNAAANANANNCTTTTTGTANNCANAGGCGCNCGCCCNCCGCGGCCGGNNGCTCACAANCTTTTTGTTTCCCTTTTANCAGAGGGTTTNATNCGNGCCGCTTGGC] [+] EMBL CB096537 [TTTGTAAAATAAGTTTCCAANAGGACTNAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCNTGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGNTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATANTAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTNTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCANCCCAGCTCAAACATTTACTTTGTAAGTTATAGGGCCTTTAAGAAATATAACAAACTACTATATTTGNGATGGAATATANTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGNGGNAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAAGGTAATGCNTAGCATAAAGATACACTGTACCACAAATGCTACNCNAAGGATGCCAATTAATCTTACTTCAATGTTGCAAAACAGAGAGAGAAAAAGNCNGCNGTGCTTTTATTCCATTACCAGGGGCCAGCCANGTTAAGAANTCCTTGNCCATAGNCCTCCCAAAGCCAGCNTTNGAAGNATTTGACTGACCCATGCCTGCNGNNGTTTACCTTNNCAACNAAANANANNCTTTTTGTANNCANAGGCGCNCGCCCNCCGCGGCCGGNNGCTCACAANCTTTTTGTTTCCCTTTTANCAGAGGGTTTNATNCGNGCCGCTTGGC] consensusID : consensus_3485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [TATCGGAGCCAGCATCGTTAGCGAGACGTTGGACCTCGGCACCAGTAAGTTTGTTTTTTCAGGGGTCTGTTTGTAAAATAAGTTTCCAAAAAGGACTAAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCATGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGTTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATAATAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTTTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCAACCCAGCTCAAACATTTACTTTGTAAGTTATAGGGTCTTTAAGAAATTATAAGAAACTAATATATTTGTGATGGAATATAGTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGTGGAAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAGGTAATGTATAGCATAAAGATACACTGTACCACAAATGTTACAAAAGGATGCAATTAATCTTACTTCAATGTTGTAAAACAGAGAGAGAAAAAGTCGGCGTGCTTTTATTNCATCACCAGGGCCAGTCAAGNTAAGAAGTCCTTGCCCATAGACTCCCAAAGCAGCATTCGAAGATATGACTGACCCATGCTGTAGTAGNTACATT] [+] EMBL CB096849 [TATCGGAGCCAGCATCGTTAGCGAGACGTTGGACCTCGGCACCAGTAAGTTTGTTTTTTCAGGGGTCTGTTTGTAAAATAAGTTTCCAAAAAGGACTAAATGTAAAAAAATCCAGCTACATCTACTGTCTAATTCCATGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGTTCAAAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACATTCTTAATAATAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGAGTAGATTATATTAAGAAACAGCTTTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTCTGAATGCAACCCAGCTCAAACATTTACTTTGTAAGTTATAGGGTCTTTAAGAAATTATAAGAAACTAATATATTTGTGATGGAATATAGTATATCAATTGTCCCAGCATAATATGACTTAGTGGATACCTAGTGGAAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAGGTAATGTATAGCATAAAGATACACTGTACCACAAATGTTACAAAAGGATGCAATTAATCTTACTTCAATGTTGTAAAACAGAGAGAGAAAAAGTCGGCGTGCTTTTATTNCATCACCAGGGCCAGTCAAGNTAAGAAGTCCTTGCCCATAGACTCCCAAAGCAGCATTCGAAGATATGACTGACCCATGCTGTAGTAGNTACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3485#0 ------------------------------------------------------------ consensus_3485#1 TATCGGAGCCAGCATCGTTAGCGAGACGTTGGACCTCGGCACCAGTAAGTTTGTTTTTTC 60 consensus_3485#0 ---------TTTGTAAAATAAGTTTCCAANA-GGACTNAATGTAAAAAAATCCAGCTACA 50 consensus_3485#1 AGGGGTCTGTTTGTAAAATAAGTTTCCAAAAAGGACTAAATGTAAAAAAATCCAGCTACA 120 ******************** * ***** ********************** consensus_3485#0 TCTACTGTCTAATTCCNTGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGNTCA 110 consensus_3485#1 TCTACTGTCTAATTCCATGTTCTTAAACCCCAATCTCCTTCAAAGGGCACTGCGAGTTCA 180 **************** *************************************** *** consensus_3485#0 AAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACAT 170 consensus_3485#1 AAAGAACAGCGAACCAAGCTTACAGAACGATAAAAGGCACCTAGTTCTAGCTAATCACAT 240 ************************************************************ consensus_3485#0 TCTTAATANTAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGA 230 consensus_3485#1 TCTTAATAATAGGTGATGTCTAATCGTAATACTAGGTTAATATATTTTGGGATGGAGGGA 300 ******** *************************************************** consensus_3485#0 GTAGATTATATTAAGAAACAGCTNTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTC 290 consensus_3485#1 GTAGATTATATTAAGAAACAGCTTTAAAAATGCCCCTCTGGTGCAGACAGTCTGAAACTC 360 *********************** ************************************ consensus_3485#0 TGAATGCANCCCAGCTCAAACATTTACTTTGTAAGTTATAGGGCCTTTAAGAAAT-ATAA 349 consensus_3485#1 TGAATGCAACCCAGCTCAAACATTTACTTTGTAAGTTATAGGGTCTTTAAGAAATTATAA 420 ******** ********************************** *********** **** consensus_3485#0 CAAACTACTATATTTGNGATGGAATATANTATATCAATTGTCCCAGCATAATATGACTTA 409 consensus_3485#1 GAAACTAATATATTTGTGATGGAATATAGTATATCAATTGTCCCAGCATAATATGACTTA 480 ****** ******** *********** ******************************* consensus_3485#0 GTGGATACCTAGNGGNAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAAAGG 469 consensus_3485#1 GTGGATACCTAGTGGAAAGTGCATATAAAATAGAGGTATTATCTAGCATATACAAAA-GG 539 ************ ** ***************************************** ** consensus_3485#0 TAATGCNTAGCATAAAGATACACTGTACCACAAATGCTACNCNAAGGATGCCAATTAATC 529 consensus_3485#1 TAATGTATAGCATAAAGATACACTGTACCACAAATGTTACA-AAAGGATGC-AATTAATC 597 ***** ***************************** *** ******** ******** consensus_3485#0 TTACTTCAATGTTGCAAAACAGAGAGAGAAAAAGNCNGCNGTGCTTTTATTCCATTACCA 589 consensus_3485#1 TTACTTCAATGTTGTAAAACAGAGAGAGAAAAAGTCGGCG-TGCTTTTATTNCATCACCA 656 ************** ******************* * ** ********** *** **** consensus_3485#0 GGGGCCAGCCANGTTAAGAANTCCTTGNCCATAGNCCTCCCAAAGCCAGCNTTNGAAGNA 649 consensus_3485#1 GGG-CCAGTCAAGNTAAGAAGTCCTTGCCCATAGAC-TCCCAAAGC-AGCATTCGAAGA- 712 *** **** ** * ****** ****** ****** * ********* *** ** **** consensus_3485#0 TTTGACTGACCCATGCCTGCNGNNGTTTACCTTNNCAACNAAANANANNCTTTTTGTANN 709 consensus_3485#1 TATGACTGACCCATGC-TGTAGTAGNT-ACATT--------------------------- 743 * ************** ** * * * ** ** consensus_3485#0 CANAGGCGCNCGCCCNCCGCGGCCGGNNGCTCACAANCTTTTTGTTTCCCTTTTANCAGA 769 consensus_3485#1 ------------------------------------------------------------ consensus_3485#0 GGGTTTNATNCGNGCCGCTTGGC 792 consensus_3485#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||