These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [GACAAGAATGGCATAACATCAGTCATGGCATCCGAGTACAGAAGGACATGAGATCTCACCGTGTTCCTACTCCAATTTGTGATGATGGTGATGGCAAGAGCATAAGAGAATGGTGCAAATAAAGCTAGGCTAGGTTCTTACCCATGGATACGCCTACATCATCTATGCTAAAATTCACTCCGCTAAGCCAGAAGCGTTTTCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAAGCTCCTGCAAAAAACAAAACAGCACGTCATCTGACACTGAAACAGAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAGTAAATTTGCTATCCGTTCCTTTGTCATTCAGAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATNATCAGGTCNAAACCAGCCAGCCAGAAGATAACATCCCATCTTCCNATCAGTCTGGCATCCTTCCAATTTCT] [+] EMBL CB096543 [GACAAGAATGGCATAACATCAGTCATGGCATCCGAGTACAGAAGGACATGAGATCTCACCGTGTTCCTACTCCAATTTGTGATGATGGTGATGGCAAGAGCATAAGAGAATGGTGCAAATAAAGCTAGGCTAGGTTCTTACCCATGGATACGCCTACATCATCTATGCTAAAATTCACTCCGCTAAGCCAGAAGCGTTTTCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAGCTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAAGCTCCTGCAAAAAACAAAACAGCACGTCATCTGACACTGAAACAGAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAGTAAATTTGCTATCCGTTCCTTTGTCATTCAGAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATNATCAGGTCNAAACCAGCCAGCCAGAAGATAACATCCCATCTTCCNATCAGTCTGGCATCCTTCCAATTTCT] consensusID : consensus_3487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [GAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGTACTTTGCCAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATAATCAGGTCTAAACAGCAGGTGGTGATCCAATGACGATGTTCCTTTGCATCTCGACAGATGGTTATTACAATCTAAAAGAAAGAATGGACTTTGTTTGCAGCAGAAAATAACATCCATCTCCAATCAGTCTGCATCTTCCATTTCTACAAGAAAATTCACATGGAAGCAACGATAAATGCCCTGTGAAAGCTATATCGCGAACCTATGTTGTAATATGCTAATCCTTTTGGTAACAGGAAATTACCATATTTCTGTCTCATGGACATGGTGTTCCAAGCTGTTCTGTGCCCATTGCCATGCTAATTAGGTCTGCATGGTAGCTCTTACGGTGCCTGCTAAACTACATTGTAAATTGTAAAAACCATCTATGTATACGGTTACTCTTAA] [-] EMBL CB632537 [GAATTACCAGCCCCTGTGCATTCGAACATCAAAAAAACAAAAAAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTCCAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGTACTTTGCCAGAGATTACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATAATCAGGTCTAAACAGCAGGTGGTGATCCAATGACGATGTTCCTTTGCATCTCGACAGATGGTTATTACAATCTAAAAGAAAGAATGGACTTTGTTTGCAGCAGAAAATAACATCCATCTCCAATCAGTCTGCATCTTCCATTTCTACAAGAAAATTCACATGGAAGCAACGATAAATGCCCTGTGAAAGCTATATCGCGAACCTATGTTGTAATATGCTAATCCTTTTGGTAACAGGAAATTACCATATTTCTGTCTCATGGACATGGTGTTCCAAGCTGTTCTGTGCCCATTGCCATGCTAATTAGGTCTGCATGGTAGCTCTTACGGTGCCTGCTAAACTACATTGTAAATTGTAAAAACCATCTATGTATACGGTTACTCTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3487#0 GACAAGAATGGCATAACATCAGTCATGGCATCCGAGTA-CAGAAGGACATGAGATCTCAC 59 consensus_3487#1 -----GAATTAC-CAGCCCCTGT----GCATTCGAACATCAAAAAAACAAAAAAAGGTGT 50 **** * * * * ** **** *** * ** ** *** * * consensus_3487#0 CG-TGTTCCTACTCCAATTTGTGATGATGGTGATGGCAAGAGCATAAGAGAATGGTGCAA 118 consensus_3487#1 AGGTGTTCCCAAACGCACGTTCGAAGAC-----CTGTGCTTTTGTGTGAAAAATGTCCAA 105 * ****** * * * * ** ** * * ** ** ** *** consensus_3487#0 ATAAAGCTAGGCTAGGTTCTTACCCATGGATACGCCTACATCATCTA-TGCTAAAATTCA 177 consensus_3487#1 GTGACATCTGAA---------ATCAAGGAATACATCTCAGACATCAAACAGTACACCTCG 156 * * * * * * * **** ** **** * ** * ** consensus_3487#0 CTCCGCTAAGCCAG----AAGCGTTTTCCGTAGCAAGCTTCCCCTGCGTGCTAACTCCAG 233 consensus_3487#1 CCCGTTCAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAG 216 * * **** * * ** * ** * * * ** ** * * ** consensus_3487#0 CTATGGCATAAAAAACAACTCGATGATCATCACTCCAGACATGCAGTTCTCAGGGAACAA 293 consensus_3487#1 -TACTTTGCCAGAGATTACTAAGAAAACTACA-TACAGCCACTTATGCGGCGCAGAACAG 274 ** * * * *** * * ** * *** ** * * ***** consensus_3487#0 GCTCCTGCAA--AAAACAAAACAGCACGTCATCTGACACTGAAACAGAATTACCAGCCCC 351 consensus_3487#1 CCATCGATAATCAGGTCTAAACAGCAGGTGGTGATCCAATGACG-ATGTTCCTTTGCATC 333 * * ** * * ******** ** * ** *** * * ** * consensus_3487#0 TGTGCATTCGAACATCAAAAAAACAAGTAAATTTGCTATCCGTTCCTTTGTCATTCAGAA 411 consensus_3487#1 TCGACAGATGGTTATTACAATCTAAAAGAAAGA----ATGGACTTTGTTTGCAG-CAGAA 388 * ** * ** * ** ** *** ** * ** ** ***** consensus_3487#0 AAAGGTGTAGGTGTTCCCAAACGCACGTTCGAAGACCTGTGCTTTTGTGTGAAAAATGTC 471 consensus_3487#1 AATAACATC--CATCTCCAATCA---GTCTGCAT-CTTCCATTTCTACAAGAAAA---TT 439 ** * * **** * ** * * * * ** * ***** * consensus_3487#0 CAAGTGACATCTGAAATCAAGGAATACATCTCAGACATCAAACAGTACACCTCGCCCGTT 531 consensus_3487#1 CACATGGAAGC----AACGATAAATGCCCTGTGAAAGCTATATCGCGAACCTATGTTGTA 495 ** ** * * * * * *** * * * * * **** ** consensus_3487#0 -CAAGCAAATTCTATGCTGTCACCATGAACAAAACATTCATCGAGCAAGATAGAGAGATT 590 consensus_3487#1 ATATGCTAATCCTTT--TGGTAACAGGAAATTACCATATTTCTGTCTC-ATGGACATGGT 552 * ** *** ** * ** * ** *** * *** ** * ** ** * * consensus_3487#0 ACTAAGAAAACTACATACAGCCACTTATGCGGCGCAGAACAGCCATCGATNATCAGGTCN 650 consensus_3487#1 GTTCC--AAGCTG--TTCTGTGCCCATTGCCATGCTAATTAGGTCTGCATGGT-AGCTCT 607 * ** ** * * * * *** ** * ** * ** * ** ** consensus_3487#0 AAACCAGCCAGCCAGAAGATAACATCCCATCTTCCNATCAGTCTGGCATCCTTCCAATTT 710 consensus_3487#1 TACGGTGCCTGCTAAACTACATTGTAAATTGTAAAAACCATCTATGTATACGGTTACTCT 667 * *** ** * * * * * * * * ** * ** * * * * consensus_3487#0 CT- 712 consensus_3487#1 TAA 670 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||