These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCATGGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCCGTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCGGCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGCGTTCGTCCTGCCGCTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCGGCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTTATATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCCTTAAGACGGCTCAGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCTGAGTTCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA] [+] EMBL AK070587 [TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCATGGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCCGTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCGGCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGCGTTCGTCCTGCCGCTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCGGCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTTATATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCCTTAAGACGGCTCAGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCTGAGTTCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA] consensusID : consensus_3490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGGNTTTTTTCNTCCGGTTNTCCTTTTTTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCGGAGGACTTGGANGAGCGNTTCCAANGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGANTTCGACCAAGACGNCGGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCGGCNCCAGTGGAGAAGGAGGGAGTTNTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGNACAGTAGAGTGGAAGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTAANATGNGATCATCGCCTTGCAAATGCTTCCGTTGGATNGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGAACGTGNCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCACCCCTTAAGACGGNTCAGNTCAGCTGTGCAGGTNACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCTGAGTCNAAAAAAAAAAAAAAAACAAACCTCGTGCCGAATT] [-] EMBL BE229860 [GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGGNTTTTTTCNTCCGGTTNTCCTTTTTTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCGGAGGACTTGGANGAGCGNTTCCAANGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGANTTCGACCAAGACGNCGGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCGGCNCCAGTGGAGAAGGAGGGAGTTNTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGNACAGTAGAGTGGAAGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTAANATGNGATCATCGCCTTGCAAATGCTTCCGTTGGATNGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGAACGTGNCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCACCCCTTAAGACGGNTCAGNTCAGCTGTGCAGGTNACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCTGAGTCNAAAAAAAAAAAAAAAACAAACCTCGTGCCGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3490#0 TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCAT 60 consensus_3490#1 ------------------------------------------------------------ consensus_3490#0 GGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCC 120 consensus_3490#1 ------------------------------------------------------------ consensus_3490#0 GTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCG 180 consensus_3490#1 ------------------------------------------------------------ consensus_3490#0 GCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGC 240 consensus_3490#1 ------------------------GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGG 36 *** ** * ********* * * * ** * ** consensus_3490#0 GTTCGTCCTGCCG-CTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCG 299 consensus_3490#1 NTTTTTTCNTCCGGTTNTCCTTTTTTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCG 96 ** * * *** * *** * ** ** ** * * * ****** ** ** * *** consensus_3490#0 -ACGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAG 358 consensus_3490#1 GAGGACTTGGANGAGCGNTTCCAANGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAG 156 * *** * ** ***** **** * * ********************************* consensus_3490#0 AATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCG 418 consensus_3490#1 AATGAGGANTTCGACCAAGACGNCGGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCG 216 ******** ***** ******* ********************** ** ******* *** consensus_3490#0 GCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCA 478 consensus_3490#1 GCNCCAGTGGAGAAGGAGGGAGTTNTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCA 276 ** ********************* ****** ** ** ********************** consensus_3490#0 AAGAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTT 538 consensus_3490#1 AAGAGGGAGGNACAGTAGAGTGGAAGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTA 336 ********** ***************************** ****************** consensus_3490#0 ATATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCA 598 consensus_3490#1 ANATGNGATCATCGCCTTGCAAATGCTTCCGTTGGATNGACAAATTATGCAATGGATGCA 396 * *** ******************************* ********************** consensus_3490#0 AGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGAT 658 consensus_3490#1 AGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGAT 456 ************************************************************ consensus_3490#0 TGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCC-TTAAGACGG 717 consensus_3490#1 TGGTGAACGTGNCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCACCCCTTAAGACGG 516 ***** ***** *********************************** ** ********* consensus_3490#0 CTCAGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCC-T 776 consensus_3490#1 NTCAGNTCAGCTGTGCAGGTNACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCT 576 **** ************** ************************************* * consensus_3490#0 GAGTTCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA-- 819 consensus_3490#1 GAGTCNAAAAAAAAAAA-----AAAAACAAACCTCGTGCCGAATT 616 **** *** * ** * * * * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||