cluster # 3490

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Oryza sativa
cluster # 3490 cluster # 3490 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3490#0 length = 819 sequences # 1

consensus_3490#1 length = 616 sequences # 1

consensusID : consensus_3490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence

                              [TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCATGGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCCGTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCGGCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGCGTTCGTCCTGCCGCTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCGGCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTTATATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCCTTAAGACGGCTCAGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCTGAGTTCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA]

[+] EMBL AK070587             [TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCATGGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCCGTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCGGCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGCGTTCGTCCTGCCGCTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCGACGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCGGCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTTATATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCCTTAAGACGGCTCAGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCTGAGTTCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA]




>consensus_3490#0
TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCAT
GGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCC
GTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCG
GCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGC
GTTCGTCCTGCCGCTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCGA
CGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAA
TGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCGGC
GCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCAAA
GAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTTAT
ATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCAAG
AGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTG
GTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCCTTAAGACGGCTC
AGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCTGAGT
TCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA

consensusID : consensus_3490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGGNTTTTTTCNTCCGGTTNTCCTTTTTTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCGGAGGACTTGGANGAGCGNTTCCAANGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGANTTCGACCAAGACGNCGGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCGGCNCCAGTGGAGAAGGAGGGAGTTNTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGNACAGTAGAGTGGAAGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTAANATGNGATCATCGCCTTGCAAATGCTTCCGTTGGATNGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGAACGTGNCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCACCCCTTAAGACGGNTCAGNTCAGCTGTGCAGGTNACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCTGAGTCNAAAAAAAAAAAAAAAACAAACCTCGTGCCGAATT]

[-] EMBL BE229860             [GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGGNTTTTTTCNTCCGGTTNTCCTTTTTTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCGGAGGACTTGGANGAGCGNTTCCAANGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGANTTCGACCAAGACGNCGGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCGGCNCCAGTGGAGAAGGAGGGAGTTNTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGNACAGTAGAGTGGAAGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTAANATGNGATCATCGCCTTGCAAATGCTTCCGTTGGATNGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGAACGTGNCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCACCCCTTAAGACGGNTCAGNTCAGCTGTGCAGGTNACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCTGAGTCNAAAAAAAAAAAAAAAACAAACCTCGTGCCGAATT]




>consensus_3490#1
GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGGNTTTTTTCNTCCGGTTNTCCTTTT
TTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCGGAGGACTTGGANGAGCGNTTCCAA
NGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGANTTCGACCAAGACGNC
GGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCGGCNCCAGTGGAGAAGGAGGGAGTT
NTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCAAAGAGGGAGGNACAGTAGAGTGGA
AGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTAANATGNGATCATCGCCTTGCAAAT
GCTTCCGTTGGATNGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAG
TCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGATTGGTGAACGTGNCCTGTAGTTTAG
AACATCAGATGGAGGAATGTGCACCCCTTAAGACGGNTCAGNTCAGCTGTGCAGGTNACA
GCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCTGAGTCNAAAAAAAAAAAAAAAACA
AACCTCGTGCCGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3490#0      TGCTGCTCTGCTTCTGCTTGCCTGTGCTGTGCTGTGTGTGTGGCCTTCGCTACCATCCAT 60
consensus_3490#1      ------------------------------------------------------------
                                                                                  

consensus_3490#0      GGCGGCGCGAGGTCTCGCTGCTCTCTCCTCCCCGGCGCGCGTCGGCGCGAGCGCTACGCC 120
consensus_3490#1      ------------------------------------------------------------
                                                                                  

consensus_3490#0      GTGCTCTGGGAGGCCTGTCCGTGTATCGGCTACGCCGGCAGCGGGCGGCTGGCGGCGGCG 180
consensus_3490#1      ------------------------------------------------------------
                                                                                  

consensus_3490#0      GCGGCGGTCCATGGTCGTGCGGGCCGGCGGGCCGCCGAGCACGAACGCGCTCATCCTGGC 240
consensus_3490#1      ------------------------GGGCCCCCCCCGGAGCACGAANGNGTTAATTCNGGG 36
                                               ***   ** * ********* * * * ** * ** 

consensus_3490#0      GTTCGTCCTGCCG-CTCTCCCTCTTCGTCGGCACGCTCATCACCGCCGCCCGCGTCGCCG 299
consensus_3490#1      NTTTTTTCNTCCGGTTNTCCTTTTTTGTGGGNANGTTAATCACCCCCNNCCNGTTTCCCG 96
                       **  * *  ***  * *** * ** ** ** * * * ****** **  **   *  ***

consensus_3490#0      -ACGACCTCGACGAGCGCTTCCTACGCGAGATGGAGTCCAACAAAGCGATAATGGAAGAG 358
consensus_3490#1      GAGGACTTGGANGAGCGNTTCCAANGNGAGATGGAGTCCAACAAAGCGATAATGGAAGAG 156
                       * *** * ** ***** **** * * *********************************

consensus_3490#0      AATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGACGCCGAGCAGCCG 418
consensus_3490#1      AATGAGGANTTCGACCAAGACGNCGGAGGCGAAGAAGAGGAGGAGNACCCCGAGCACCCG 216
                      ******** ***** ******* ********************** ** ******* ***

consensus_3490#0      GCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCA 478
consensus_3490#1      GCNCCAGTGGAGAAGGAGGGAGTTNTTGTTGNTGTTGNTCCGCGCACTAGAAACAGGCCA 276
                      ** ********************* ****** ** ** **********************

consensus_3490#0      AAGAGGGAGGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTT 538
consensus_3490#1      AAGAGGGAGGNACAGTAGAGTGGAAGAGCAGAAAAAGCATNTCGGTTTTTCTTGTTCCTA 336
                      ********** ***************************** ****************** 

consensus_3490#0      ATATGTGATCATCGCCTTGCAAATGCTTCCGTTGGATTGACAAATTATGCAATGGATGCA 598
consensus_3490#1      ANATGNGATCATCGCCTTGCAAATGCTTCCGTTGGATNGACAAATTATGCAATGGATGCA 396
                      * *** ******************************* **********************

consensus_3490#0      AGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGAT 658
consensus_3490#1      AGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGTTAGAGAAATGAT 456
                      ************************************************************

consensus_3490#0      TGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCC-TTAAGACGG 717
consensus_3490#1      TGGTGAACGTGNCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCACCCCTTAAGACGG 516
                      ***** ***** *********************************** ** *********

consensus_3490#0      CTCAGCTCAGCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCC-T 776
consensus_3490#1      NTCAGNTCAGCTGTGCAGGTNACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCCCT 576
                       **** ************** ************************************* *

consensus_3490#0      GAGTTCAAATCTGCTTTGTTTCAGAATCGTATCAAATACCGAA-- 819
consensus_3490#1      GAGTCNAAAAAAAAAAA-----AAAAACAAACCTCGTGCCGAATT 616
                      ****  ***             * ** *  * *   * *****