cluster # 3498

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Oryza sativa
cluster # 3498 cluster # 3498 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3498#0 length = 838 sequences # 1

consensus_3498#1 length = 616 sequences # 1

consensusID : consensus_3498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 838
fasta sequence

                              [AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGTAATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGCTTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGTGCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCGAGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATCAACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTCTGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAAATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAAATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATATTGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCATGATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT]

[+] EMBL CB096839             [AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGTAATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGCTTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGTGCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCGAGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATCAACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTCTGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAAATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAAATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATATTGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCATGATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT]




>consensus_3498#0
AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGT
AATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGC
TTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGT
GCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCG
AGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATC
AACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTC
TGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAA
ATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAA
ATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCA
GGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAA
AATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTG
GATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATAT
TGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCAT
GATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT

consensusID : consensus_3498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [AGAGGGGAAGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCAAGTGGAAATTGACACACGCTGAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATATTGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCATGATACTTCCACCACCTGAACCTATTTCTACAGGTTGTGTGTTTCTGTCGTTTCTCCTTCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAATTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAATGCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCATTAGAATGTAAATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTATTGGGTATCTTCTCAAT]

[+] EMBL CB096854             [AGAGGGGAAGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCAAGTGGAAATTGACACACGCTGAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATATTGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCATGATACTTCCACCACCTGAACCTATTTCTACAGGTTGTGTGTTTCTGTCGTTTCTCCTTCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAATTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAATGCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCATTAGAATGTAAATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTATTGGGTATCTTCTCAAT]




>consensus_3498#1
AGAGGGGAAGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCAAGTGGAAAT
TGACACACGCTGAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCC
CTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTT
GAGGTGTTGGCTGGATGAAAGAAATATTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGA
AGAAGGGTATATTGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGA
TGGCGATCTCATGATACTTCCACCACCTGAACCTATTTCTACAGGTTGTGTGTTTCTGTC
GTTTCTCCTTCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTT
TATGCACAATTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACA
GCTAACAATGCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCAT
TAGAATGTAAATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTAT
TGGGTATCTTCTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3498#0      AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGT 60
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      AATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGC 120
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      TTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGT 180
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      GCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCG 240
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      AGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATC 300
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      AACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTC 360
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      TGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAA 420
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      ATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAA 480
consensus_3498#1      ---------------------------------AGAGGGGAAGATGGGGTTCTGAAGTAG 27
                                                       ***  *   ****    *** *   * 

consensus_3498#0      ATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCA 540
consensus_3498#1      CTAATCCTAAGAACCG---------CTGTTCCAAGTG-----GAAATTGACACACGCTGA 73
                       ** *     **   *          ** * *   *        **  **  **   * *

consensus_3498#0      GGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAA 600
consensus_3498#1      GGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAA 133
                      ************************************************************

consensus_3498#0      AATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTG 660
consensus_3498#1      AATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTG 193
                      ************************************************************

consensus_3498#0      GATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATAT 720
consensus_3498#1      GATGAAAGAAATATT-CCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATAT 252
                      *************** ********************************* ** *******

consensus_3498#0      TGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCAT 780
consensus_3498#1      TGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCAT 312
                      ******* ** ************ ****** * ***************************

consensus_3498#0      GATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT-- 838
consensus_3498#1      GATACTTCCACCACCTG-AACCTATTTCTACAGGTTGTGT--GTTTCTGTCGTTTCTCCT 369
                      ******* ** ** * * **************** ** *   ***   * ** **     

consensus_3498#0      ------------------------------------------------------------
consensus_3498#1      TCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAA 429
                                                                                  

consensus_3498#0      ------------------------------------------------------------
consensus_3498#1      TTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAAT 489
                                                                                  

consensus_3498#0      ------------------------------------------------------------
consensus_3498#1      GCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCATTAGAATGTA 549
                                                                                  

consensus_3498#0      ------------------------------------------------------------
consensus_3498#1      AATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTATTGGGTATCT 609
                                                                                  

consensus_3498#0      -------
consensus_3498#1      TCTCAAT 616