These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1119 fasta sequence [TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAGAGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTTTTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGAGGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGTCGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGGCTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACTATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGGTGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGCGCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGGGGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC] [+] EMBL AK107234 [TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAGAGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTTTTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGAGGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGTCGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGGCTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACTATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGGTGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGCGCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGGGGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC] consensusID : consensus_3501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA] [+] EMBL BI800328 [TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3501#0 TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAG 60 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 AGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTT 120 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 TTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGA 180 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 GGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGT 240 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 CGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGG 300 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 CTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACT 360 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 ATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGG 420 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 TGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGC 480 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 GCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGG 540 consensus_3501#1 ------------------------------------------------------------ consensus_3501#0 GGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG 600 consensus_3501#1 -------------------TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG 41 * * ************************************ consensus_3501#0 ACGGCGAGGACGCCGCCGCCCGC--GCCGCC-GCCATCAGC-GGCGCCCGC--GCCCTGG 654 consensus_3501#1 ACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGG 101 ************** * **** *** ** ********* ******* ******* consensus_3501#0 TCATGTGCA-GCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGC-TCCAC-GCCG 711 consensus_3501#1 TCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCA 161 ********* *************************************** ***** *** consensus_3501#0 GC--GGCACC-GACCTGGGCC-GCAACGTCACC-GGCTACCC-GTGGCTTGGCGACGAGA 765 consensus_3501#1 GGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGA 221 * ****** ********** *********** ******** ***************** consensus_3501#0 TGGAGCTGAC-TCCTCCCGGCGCCGGC-----GGCCCCCATC--TGTAGGTTCGCC--GC 815 consensus_3501#1 TGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGC 281 ********** *** ** ** * * ******** ********* * ** consensus_3501#0 GGAGGTGGCCAGCC-GTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCG 874 consensus_3501#1 GGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCG 341 ************** ********************************************* consensus_3501#0 GCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCA 934 consensus_3501#1 GCG-------------------AGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCA 382 *** ************************************** consensus_3501#0 GTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCA 994 consensus_3501#1 GTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCA 442 ************************************************************ consensus_3501#0 GTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATC 1054 consensus_3501#1 GTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATC 502 ************************************************************ consensus_3501#0 AGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACT 1114 consensus_3501#1 AGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCA-TAATATGAAAACT 561 ********************************************** ************* consensus_3501#0 GCATC------------------- 1119 consensus_3501#1 ACATCTTTGTTTTTTAAGAAAAAA 585 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||