|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1234 fasta sequence
[GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGACACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAGGTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGAAACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAGTGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGAAATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTAATATATATAGCACTTGATAATATAAGTAC]
[+] EMBL AK102457 [GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGACACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAGGTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGAAACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAGTGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGAAATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTAATATATATAGCACTTGATAATATAAGTAC]
consensusID : consensus_3507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGTCGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG]
[+] EMBL CB097092 [GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGTCGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3507#0 GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGAC 60
consensus_3507#1 ------------------------------------------------------------
consensus_3507#0 ACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAG 120
consensus_3507#1 ------------------------------------------------------------
consensus_3507#0 GTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGA 180
consensus_3507#1 ------------------------------------------------------------
consensus_3507#0 AACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAG 240
consensus_3507#1 ------------------------------------------------------------
consensus_3507#0 TGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGA 300
consensus_3507#1 ------------------------------------------------------------
consensus_3507#0 AATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTAT 360
consensus_3507#1 --------------------------------------GTATTTGGGCGC-----ATAGT 17
**** ** * * *
consensus_3507#0 TATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTA 420
consensus_3507#1 TAGTAATAAATTTTAAGTCCAAAAATGCT-----GCAGTGACTAATGTCGTTACTGAACA 72
** **** * ** * * * * * * ** ** * ** *
consensus_3507#0 CGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGG 480
consensus_3507#1 TTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGG 132
* *** * ***** ** ** * ***************************
consensus_3507#0 TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTC 540
consensus_3507#1 TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTC 192
************************************************* *********
consensus_3507#0 ATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT 600
consensus_3507#1 TTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT 252
***********************************************************
consensus_3507#0 GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA 660
consensus_3507#1 GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA 312
************************************************************
consensus_3507#0 CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC 720
consensus_3507#1 CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC 372
************************************************************
consensus_3507#0 TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA 780
consensus_3507#1 TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA 432
************************************************************
consensus_3507#0 TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT 840
consensus_3507#1 TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT 492
************************************************************
consensus_3507#0 TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTT 900
consensus_3507#1 TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTT 552
**************************************** *******************
consensus_3507#0 GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT 960
consensus_3507#1 GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT 612
************************************************************
consensus_3507#0 ATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG 1020
consensus_3507#1 ACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG 672
* **********************************************************
consensus_3507#0 ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTC 1080
consensus_3507#1 ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTN 732
***************************************** *****************
consensus_3507#0 CGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTA 1140
consensus_3507#1 CGACTTAAGTTANGTGACTTTAATATCACTGACATG------------------------ 768
************ ****************** ***
consensus_3507#0 TTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGA 1200
consensus_3507#1 ------------------------------------------------------------
consensus_3507#0 AATTAATATATATAGCACTTGATAATATAAGTAC 1234
consensus_3507#1 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||