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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2044 fasta sequence
[GCCTCACACACACTCTCCCCCTCTCTTCCCTCGCCGCCGGCAGCGGCGGCGGCGGCCGAGAAGAGCGGCTACCGGCGCTGCTACGCGCGGCGCCTGCCCCCGTTTCGTCTTGCTGGGTTTGCCGGTGTGATGTTGGTGCTATCGATTTAGAGCGGTATCTGAGTTCCTTTGGAGGAGACCACTGAAGTCCTATGCTACCTTGCCGAGATTTTGTACATAAGACCTTTGTAGGATGAAAGGTGGTTGTCTACAGAGACCTCTTGTCAGTAAACTATGCCTCGGCTTCGCGGCTCTCCTCACTGCCCTGATTGTTATCATGTCACTGGAAGAAGCTCCAGTCCTCACAATCTTCAGCTCAACGCCAGAAAAATTGAAAGTTTTATCTCAAGGTTTCCTACAGCAGCAGGAGCAGGAACATCTTGAAGATAGTACAGCCAGACAGAACGAAAATTGCAATTATGCAAAGGGAAAATGGGTGGCAGACAAGAAGCGGCCACTCTATTCTGGCAATGAGTGCAAACAGTGGCTATCGAAAATGTGGGCTTGTCGAATGATGCAACGCGCAGATTTCTCTTACGAGAATTTTCGGTGGCAGCCGCATGGATGTCAGATGCCTGAGTTTACGGGGCCTAACATTTTGAAAAGGTTGAGGCATAAAACTCTTGCTTTTGTTGGTGATTCTCTTGGTAGACAGCAATTTCAGTCCATGATGTGTATAGCTACAGGTGGTAAATACAGCCCAGAAGTTGAAGATGTTGGATGGAAATATGGCCTAGTTAAAGCTCCAGGTGCTTTAAGACCTGACGGATGGGCTTACTGGTTTCCAGGGACTAATTCCACAATCCTTTTCTACTGGTCTGCTAGTCTATCTGAACTGGAACTTCTGAATACAACAGATTCAGTGACATCCTATGCATTGCATCTTGATCGTCCAGTTACATTTTTGAAGAAGTATCTCCACAGTTTTGATGTGTTAGTACTTAACACAGGTCATCACTGGAACAGAGGGAAGTTCAATGGAAATCACTGGGAACTGTACGCTGATGGGAAACCTGTAGGCAAAGGTAGACTTGCAGATCTGAACCGTGCAAAAAATCTTACATTGTACAGCATTGCCAGATGGGTGGATTCAGAACTTGTGCGATATCCTCAAGTGAAAGCTTTCCTGAGGACAATATCACCCAGGCATTTTGTAAATGGTGACTGGAATACTGGGGGAAGCTGTGGCAATACCGTTCCCTTGTCTAACGGAAGTGAGGTATTGCAGGATCATTCAAGCGACTTACCTGTGGAGAGTGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGTTGTAACATTTGAAAAGTTTCATGTAATCATTGTAGAGTTTATACATAGTCCAGAAGAAATATAAACATGGCATCTGT]
[+] EMBL AK063997 [GCCTCACACACACTCTCCCCCTCTCTTCCCTCGCCGCCGGCAGCGGCGGCGGCGGCCGAGAAGAGCGGCTACCGGCGCTGCTACGCGCGGCGCCTGCCCCCGTTTCGTCTTGCTGGGTTTGCCGGTGTGATGTTGGTGCTATCGATTTAGAGCGGTATCTGAGTTCCTTTGGAGGAGACCACTGAAGTCCTATGCTACCTTGCCGAGATTTTGTACATAAGACCTTTGTAGGATGAAAGGTGGTTGTCTACAGAGACCTCTTGTCAGTAAACTATGCCTCGGCTTCGCGGCTCTCCTCACTGCCCTGATTGTTATCATGTCACTGGAAGAAGCTCCAGTCCTCACAATCTTCAGCTCAACGCCAGAAAAATTGAAAGTTTTATCTCAAGGTTTCCTACAGCAGCAGGAGCAGGAACATCTTGAAGATAGTACAGCCAGACAGAACGAAAATTGCAATTATGCAAAGGGAAAATGGGTGGCAGACAAGAAGCGGCCACTCTATTCTGGCAATGAGTGCAAACAGTGGCTATCGAAAATGTGGGCTTGTCGAATGATGCAACGCGCAGATTTCTCTTACGAGAATTTTCGGTGGCAGCCGCATGGATGTCAGATGCCTGAGTTTACGGGGCCTAACATTTTGAAAAGGTTGAGGCATAAAACTCTTGCTTTTGTTGGTGATTCTCTTGGTAGACAGCAATTTCAGTCCATGATGTGTATAGCTACAGGTGGTAAATACAGCCCAGAAGTTGAAGATGTTGGATGGAAATATGGCCTAGTTAAAGCTCCAGGTGCTTTAAGACCTGACGGATGGGCTTACTGGTTTCCAGGGACTAATTCCACAATCCTTTTCTACTGGTCTGCTAGTCTATCTGAACTGGAACTTCTGAATACAACAGATTCAGTGACATCCTATGCATTGCATCTTGATCGTCCAGTTACATTTTTGAAGAAGTATCTCCACAGTTTTGATGTGTTAGTACTTAACACAGGTCATCACTGGAACAGAGGGAAGTTCAATGGAAATCACTGGGAACTGTACGCTGATGGGAAACCTGTAGGCAAAGGTAGACTTGCAGATCTGAACCGTGCAAAAAATCTTACATTGTACAGCATTGCCAGATGGGTGGATTCAGAACTTGTGCGATATCCTCAAGTGAAAGCTTTCCTGAGGACAATATCACCCAGGCATTTTGTAAATGGTGACTGGAATACTGGGGGAAGCTGTGGCAATACCGTTCCCTTGTCTAACGGAAGTGAGGTATTGCAGGATCATTCAAGCGACTTACCTGTGGAGAGTGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGTTGTAACATTTGAAAAGTTTCATGTAATCATTGTAGAGTTTATACATAGTCCAGAAGAAATATAAACATGGCATCTGT]
consensusID : consensus_3509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[GGACGAGACAAGGGGGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGNTGTAACATTTGAAAAGGTTTCATGTAATCATTGTAGAGNTTATACATAGTCCAGAAGAAATATAAA]
[+] EMBL CB097112 [GGACGAGACAAGGGGGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGNTGTAACATTTGAAAAGGTTTCATGTAATCATTGTAGAGNTTATACATAGTCCAGAAGAAATATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3509#0 GCCTCACACACACTCTCCCCCTCTCTTCCCTCGCCGCCGGCAGCGGCGGCGGCGGCCGAG 60
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 AAGAGCGGCTACCGGCGCTGCTACGCGCGGCGCCTGCCCCCGTTTCGTCTTGCTGGGTTT 120
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 GCCGGTGTGATGTTGGTGCTATCGATTTAGAGCGGTATCTGAGTTCCTTTGGAGGAGACC 180
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 ACTGAAGTCCTATGCTACCTTGCCGAGATTTTGTACATAAGACCTTTGTAGGATGAAAGG 240
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TGGTTGTCTACAGAGACCTCTTGTCAGTAAACTATGCCTCGGCTTCGCGGCTCTCCTCAC 300
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TGCCCTGATTGTTATCATGTCACTGGAAGAAGCTCCAGTCCTCACAATCTTCAGCTCAAC 360
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 GCCAGAAAAATTGAAAGTTTTATCTCAAGGTTTCCTACAGCAGCAGGAGCAGGAACATCT 420
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TGAAGATAGTACAGCCAGACAGAACGAAAATTGCAATTATGCAAAGGGAAAATGGGTGGC 480
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 AGACAAGAAGCGGCCACTCTATTCTGGCAATGAGTGCAAACAGTGGCTATCGAAAATGTG 540
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 GGCTTGTCGAATGATGCAACGCGCAGATTTCTCTTACGAGAATTTTCGGTGGCAGCCGCA 600
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TGGATGTCAGATGCCTGAGTTTACGGGGCCTAACATTTTGAAAAGGTTGAGGCATAAAAC 660
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TCTTGCTTTTGTTGGTGATTCTCTTGGTAGACAGCAATTTCAGTCCATGATGTGTATAGC 720
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TACAGGTGGTAAATACAGCCCAGAAGTTGAAGATGTTGGATGGAAATATGGCCTAGTTAA 780
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 AGCTCCAGGTGCTTTAAGACCTGACGGATGGGCTTACTGGTTTCCAGGGACTAATTCCAC 840
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 AATCCTTTTCTACTGGTCTGCTAGTCTATCTGAACTGGAACTTCTGAATACAACAGATTC 900
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 AGTGACATCCTATGCATTGCATCTTGATCGTCCAGTTACATTTTTGAAGAAGTATCTCCA 960
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 CAGTTTTGATGTGTTAGTACTTAACACAGGTCATCACTGGAACAGAGGGAAGTTCAATGG 1020
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 AAATCACTGGGAACTGTACGCTGATGGGAAACCTGTAGGCAAAGGTAGACTTGCAGATCT 1080
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 GAACCGTGCAAAAAATCTTACATTGTACAGCATTGCCAGATGGGTGGATTCAGAACTTGT 1140
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 GCGATATCCTCAAGTGAAAGCTTTCCTGAGGACAATATCACCCAGGCATTTTGTAAATGG 1200
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 TGACTGGAATACTGGGGGAAGCTGTGGCAATACCGTTCCCTTGTCTAACGGAAGTGAGGT 1260
consensus_3509#1 ------------------------------------------------------------
consensus_3509#0 ATTGCAGGATCATTCAAGCGACTTACCTGTGGAGAGTGCTGTGAATGGAACTCGGGTTAA 1320
consensus_3509#1 ----------------------GGACGAGACAAGGGGGCTGTGAATGGAACTCGGGTTAA 38
** * ** * ***********************
consensus_3509#0 GATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTAC 1380
consensus_3509#1 GATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTAC 98
************************************************************
consensus_3509#0 TTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTAT 1440
consensus_3509#1 TTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTAT 158
************************************************************
consensus_3509#0 ACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGG 1500
consensus_3509#1 ACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGG 218
************************************************************
consensus_3509#0 ATTTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGAT 1560
consensus_3509#1 ATTTTTTTTTTT-ACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGAT 277
************ ***********************************************
consensus_3509#0 ATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTT 1620
consensus_3509#1 ATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTT 337
************************************************************
consensus_3509#0 CTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACT 1680
consensus_3509#1 CTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACT 397
************************************************************
consensus_3509#0 AGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATA 1740
consensus_3509#1 AGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATA 457
************************************************************
consensus_3509#0 TGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTG 1800
consensus_3509#1 TGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTG 517
************************************************************
consensus_3509#0 TTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATA 1860
consensus_3509#1 TTTTCTTTTTTTTT--GAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATA 575
************** ********************************************
consensus_3509#0 TATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAG 1920
consensus_3509#1 TATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAG 635
************************************************************
consensus_3509#0 GTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGTTGTAACATTTGAA 1980
consensus_3509#1 GTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGNTGTAACATTTGAA 695
********************************************** *************
consensus_3509#0 AAG-TTTCATGTAATCATTGTAGAGTTTATACATAGTCCAGAAGAAATATAAACATGGCA 2039
consensus_3509#1 AAGGTTTCATGTAATCATTGTAGAGNTTATACATAGTCCAGAAGAAATATAAA------- 748
*** ********************* ***************************
consensus_3509#0 TCTGT 2044
consensus_3509#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||