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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1357 fasta sequence
[ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGAGGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA]
[+] EMBL AK108868 [ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGAGGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA]
consensusID : consensus_351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 930 fasta sequence
[CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATCCACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGGGCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCCGCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCGCCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGGCCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCACTACGTTAACGGATTAAACGAGATTATTTT]
[+] EMBL AK108299 [CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATCCACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGGGCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCCGCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCGCCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGGCCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCACTACGTTAACGGATTAAACGAGATTATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_351#0 ----ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATC 56
consensus_351#1 CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATC 60
*************************************** ****************
consensus_351#0 CACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG 116
consensus_351#1 CACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG 120
***** ******************************************************
consensus_351#0 CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG 176
consensus_351#1 CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG 180
************************************************************
consensus_351#0 GCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA 236
consensus_351#1 GTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA 240
* **********************************************************
consensus_351#0 CCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCA 296
consensus_351#1 CCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCA 300
******************* *********************** *********** ****
consensus_351#0 TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGA 356
consensus_351#1 TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGA 360
******************************* ***** ** ******** **********
consensus_351#0 ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC 416
consensus_351#1 ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC 420
************************************************************
consensus_351#0 TCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGG 476
consensus_351#1 TCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGG 480
******* *********************** ** ***************** *******
consensus_351#0 GTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCA 536
consensus_351#1 GCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCA 540
* ***** ******************** * *********** ****************
consensus_351#0 CTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCC 596
consensus_351#1 CTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCC 600
******* ******************** ************************** ****
consensus_351#0 GCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTG 656
consensus_351#1 GCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCG 660
******************* ***** ************************ * ***** *
consensus_351#0 ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGC 716
consensus_351#1 ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGC 720
************************************************** *********
consensus_351#0 CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCG 776
consensus_351#1 CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCG 780
************************************* *********** ****** ***
consensus_351#0 CCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGG 836
consensus_351#1 CCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGG 840
************* ** ***************** ************* **********
consensus_351#0 CCGAGGCCGC----GCCTGC--AGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGC 890
consensus_351#1 CCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCA-TGTACAAGCAGGGCTGC 899
*** * **** * ** * ******** * * ** * ** * **********
consensus_351#0 TGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCA 950
consensus_351#1 ----ACTACGTTAACGGA---TTAAACGAGATTATTTT---------------------- 930
* ** ***** * ******** ****
consensus_351#0 TGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGG 1010
consensus_351#1 ------------------------------------------------------------
consensus_351#0 TCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTC 1070
consensus_351#1 ------------------------------------------------------------
consensus_351#0 GTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTG 1130
consensus_351#1 ------------------------------------------------------------
consensus_351#0 ACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTT 1190
consensus_351#1 ------------------------------------------------------------
consensus_351#0 GCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCT 1250
consensus_351#1 ------------------------------------------------------------
consensus_351#0 TCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTT 1310
consensus_351#1 ------------------------------------------------------------
consensus_351#0 ATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA 1357
consensus_351#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||