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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2170 fasta sequence
[GCGTGGAAGTGGAAGGATCGGAGGCGGGCGCGCGAGCGAGCGAGGCAGAGGGGACGGCGAGCCGCAGCTACCGCACGGGCCTCGAGGGATCGATCCGCGCCACCGCCGCGGCCGCCTCTGGCGAATGCGCCCGCGCGAATGCCGCCGCCGTCGCCGGAGGTGGCGGCGGCGGGCGGCGGCGGAGGGGGAGAGAGAGAGAAGAAAGGGGGAGGGGTAAAACCGTAAAAACCGTAGGAAAGCGAGGGTGAAAGTGAAAAGCGAGAGGAAGGTGGGGGTGGGGCACTGACAAGTGGGCCCCGTTTGCAGTGACACGCCATCTCCTTCCGGTAGAGGGAGCCCGTCTCGCCTCCGCTCCGATTCCGGCGGCGGCGACTCCACCGGCGGCGAATCGCCGCCGCCGGCCACCGCCACGCGCCGCTCTTGGATCATTCAATCACCCCCAAGACACCATTCCAATCCAGTTCAGTGTTAGTTCGGAATAGACATGAACAGTTCTTGGCTTCTTGATGATTTGCTCTTAGCTGCTGTTCTATGCAATTGTTCAATATTTTTTTGTGTGTATGTGTTTTTTTTAATTTTTAATTTGCTGAGGCACAGAATTTGGAATTGCTCCATAAATGATTGGAGGATTTGTTGTGACTTTTCCACAATGTTTCTTCTCATCTTGATTGGTTGCCGTGCACCCCAAGCAGCAAATTCCAACCCTTGCTTAGAATTGATGTGGTCAATCCAGGCTTCCAGCCGATTGGTGGATTATGGTGTTCTTTATATATCATGTTTTGGATACACTCCACGTTGATCTAGTCTCATATGTCAGTGAACTAACATTTTTTTTGCAAGTTGGTCTGAAGGGAAAGTTCATGGCTACTGCTCTTTTGCTGTATGGTTTACATCCACATATTTGATGGACTCTCTTCCACACTCAAATTTAATTTACTAATTTAGTGATGTATATATAGGCAGTAGGCACATAGCATACTTGAGCATGTTCTACTTCTTCTAGCCATTGATTTGTTCCAGAGATTTGGAGATTGTTCAGTTTTTGTTTGGTTTCTTGTAAATTTAAGTAGCACAGAGTGGAGATGCAGGAAGGAAGGAAAGGGGTGCCATCTCTGCTCTCATCTCAGGGAGAATGCATTGCATCCAACATCACACAGCTGATTGGTTGGACACCACTGATAGAATTGAAGAATATTGCTAAGAAAGATGGCATAGCTGCTCGGCTGGTTGGGAAGATTGAGCCATACCAACCCCTTTCCTCTGTGAAGGATCGGAGTGCTCTCAGATTGATCGAAGATGCAGAGGAGAGAGGCTTAATCTCACCTGGCATCACAACACTAGCAGGGGTCACAAGCGGCAATCTTGGTATCGGAGTGGCGTTTGTTGCTGCTCAGAAAGGTCAGATGTAACATGCTAGTCTCCTGCAGACCCTGCACTGAATGGATTCAAGGGGCTACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCGCACTTCAGATGGACAGGACCTGAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAGGTTGGCAAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAGGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGCTTCATTCTTGGTGGTTGTTCTACTCTAATATTGTAAGAAGCTTCTGTACATTGGTGTTATTACTCTTAGATTAGAATCAATTGTATGG]
[+] EMBL AK110984 [GCGTGGAAGTGGAAGGATCGGAGGCGGGCGCGCGAGCGAGCGAGGCAGAGGGGACGGCGAGCCGCAGCTACCGCACGGGCCTCGAGGGATCGATCCGCGCCACCGCCGCGGCCGCCTCTGGCGAATGCGCCCGCGCGAATGCCGCCGCCGTCGCCGGAGGTGGCGGCGGCGGGCGGCGGCGGAGGGGGAGAGAGAGAGAAGAAAGGGGGAGGGGTAAAACCGTAAAAACCGTAGGAAAGCGAGGGTGAAAGTGAAAAGCGAGAGGAAGGTGGGGGTGGGGCACTGACAAGTGGGCCCCGTTTGCAGTGACACGCCATCTCCTTCCGGTAGAGGGAGCCCGTCTCGCCTCCGCTCCGATTCCGGCGGCGGCGACTCCACCGGCGGCGAATCGCCGCCGCCGGCCACCGCCACGCGCCGCTCTTGGATCATTCAATCACCCCCAAGACACCATTCCAATCCAGTTCAGTGTTAGTTCGGAATAGACATGAACAGTTCTTGGCTTCTTGATGATTTGCTCTTAGCTGCTGTTCTATGCAATTGTTCAATATTTTTTTGTGTGTATGTGTTTTTTTTAATTTTTAATTTGCTGAGGCACAGAATTTGGAATTGCTCCATAAATGATTGGAGGATTTGTTGTGACTTTTCCACAATGTTTCTTCTCATCTTGATTGGTTGCCGTGCACCCCAAGCAGCAAATTCCAACCCTTGCTTAGAATTGATGTGGTCAATCCAGGCTTCCAGCCGATTGGTGGATTATGGTGTTCTTTATATATCATGTTTTGGATACACTCCACGTTGATCTAGTCTCATATGTCAGTGAACTAACATTTTTTTTGCAAGTTGGTCTGAAGGGAAAGTTCATGGCTACTGCTCTTTTGCTGTATGGTTTACATCCACATATTTGATGGACTCTCTTCCACACTCAAATTTAATTTACTAATTTAGTGATGTATATATAGGCAGTAGGCACATAGCATACTTGAGCATGTTCTACTTCTTCTAGCCATTGATTTGTTCCAGAGATTTGGAGATTGTTCAGTTTTTGTTTGGTTTCTTGTAAATTTAAGTAGCACAGAGTGGAGATGCAGGAAGGAAGGAAAGGGGTGCCATCTCTGCTCTCATCTCAGGGAGAATGCATTGCATCCAACATCACACAGCTGATTGGTTGGACACCACTGATAGAATTGAAGAATATTGCTAAGAAAGATGGCATAGCTGCTCGGCTGGTTGGGAAGATTGAGCCATACCAACCCCTTTCCTCTGTGAAGGATCGGAGTGCTCTCAGATTGATCGAAGATGCAGAGGAGAGAGGCTTAATCTCACCTGGCATCACAACACTAGCAGGGGTCACAAGCGGCAATCTTGGTATCGGAGTGGCGTTTGTTGCTGCTCAGAAAGGTCAGATGTAACATGCTAGTCTCCTGCAGACCCTGCACTGAATGGATTCAAGGGGCTACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCGCACTTCAGATGGACAGGACCTGAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAGGTTGGCAAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAGGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGCTTCATTCTTGGTGGTTGTTCTACTCTAATATTGTAAGAAGCTTCTGTACATTGGTGTTATTACTCTTAGATTAGAATCAATTGTATGG]
consensusID : consensus_3510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence
[CATTTGTTGCTGCTCAGAAAGGCTACAAATTCATCGCTGTCATGCCTGCTAAACTCTCGATAGATAAACAGATCCTGTTGAGATACTTGGGAGTTGAAGTGATATTGGTTGACCCTGCACTGAATGGATTCAAGGGGATACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCACATTTCAGATGGACAGGACCTTAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGTAAGAAGGTTGGCGAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGGGCAAATGCAGCTGCCATCTTGAAGGTTGCTGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTNCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAAGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGNGTAATCTTCAAGGCTTCATTCTTGGGGGGTGGTCTACTCTAAATTGGAAGAAGCTTCTGGGCATTGGGGGTANTACTCTTANATAN]
[+] EMBL CB097183 [CATTTGTTGCTGCTCAGAAAGGCTACAAATTCATCGCTGTCATGCCTGCTAAACTCTCGATAGATAAACAGATCCTGTTGAGATACTTGGGAGTTGAAGTGATATTGGTTGACCCTGCACTGAATGGATTCAAGGGGATACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCACATTTCAGATGGACAGGACCTTAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGTAAGAAGGTTGGCGAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGGGCAAATGCAGCTGCCATCTTGAAGGTTGCTGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTNCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAAGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGNGTAATCTTCAAGGCTTCATTCTTGGGGGGTGGTCTACTCTAAATTGGAAGAAGCTTCTGGGCATTGGGGGTANTACTCTTANATAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3510#0 GCGTGGAAGTGGAAGGATCGGAGGCGGGCGCGCGAGCGAGCGAGGCAGAGGGGACGGCGA 60
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 GCCGCAGCTACCGCACGGGCCTCGAGGGATCGATCCGCGCCACCGCCGCGGCCGCCTCTG 120
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 GCGAATGCGCCCGCGCGAATGCCGCCGCCGTCGCCGGAGGTGGCGGCGGCGGGCGGCGGC 180
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 GGAGGGGGAGAGAGAGAGAAGAAAGGGGGAGGGGTAAAACCGTAAAAACCGTAGGAAAGC 240
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 GAGGGTGAAAGTGAAAAGCGAGAGGAAGGTGGGGGTGGGGCACTGACAAGTGGGCCCCGT 300
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTGCAGTGACACGCCATCTCCTTCCGGTAGAGGGAGCCCGTCTCGCCTCCGCTCCGATTC 360
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CGGCGGCGGCGACTCCACCGGCGGCGAATCGCCGCCGCCGGCCACCGCCACGCGCCGCTC 420
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTGGATCATTCAATCACCCCCAAGACACCATTCCAATCCAGTTCAGTGTTAGTTCGGAAT 480
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 AGACATGAACAGTTCTTGGCTTCTTGATGATTTGCTCTTAGCTGCTGTTCTATGCAATTG 540
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTCAATATTTTTTTGTGTGTATGTGTTTTTTTTAATTTTTAATTTGCTGAGGCACAGAAT 600
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTGGAATTGCTCCATAAATGATTGGAGGATTTGTTGTGACTTTTCCACAATGTTTCTTCT 660
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CATCTTGATTGGTTGCCGTGCACCCCAAGCAGCAAATTCCAACCCTTGCTTAGAATTGAT 720
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 GTGGTCAATCCAGGCTTCCAGCCGATTGGTGGATTATGGTGTTCTTTATATATCATGTTT 780
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TGGATACACTCCACGTTGATCTAGTCTCATATGTCAGTGAACTAACATTTTTTTTGCAAG 840
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTGGTCTGAAGGGAAAGTTCATGGCTACTGCTCTTTTGCTGTATGGTTTACATCCACATA 900
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 TTTGATGGACTCTCTTCCACACTCAAATTTAATTTACTAATTTAGTGATGTATATATAGG 960
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CAGTAGGCACATAGCATACTTGAGCATGTTCTACTTCTTCTAGCCATTGATTTGTTCCAG 1020
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 AGATTTGGAGATTGTTCAGTTTTTGTTTGGTTTCTTGTAAATTTAAGTAGCACAGAGTGG 1080
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 AGATGCAGGAAGGAAGGAAAGGGGTGCCATCTCTGCTCTCATCTCAGGGAGAATGCATTG 1140
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CATCCAACATCACACAGCTGATTGGTTGGACACCACTGATAGAATTGAAGAATATTGCTA 1200
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 AGAAAGATGGCATAGCTGCTCGGCTGGTTGGGAAGATTGAGCCATACCAACCCCTTTCCT 1260
consensus_3510#1 ------------------------------------------------------------
consensus_3510#0 CTGTGAAGGATCGGAGTGCTCTCAGATTGATCGAAGATGCAGAGGAGAGAGGCTTAATCT 1320
consensus_3510#1 --------------------------------------------------CATTTGTTGC 10
** *
consensus_3510#0 CACCTGGCATCACAACA--CTAGCAGGGGTCACAAGCGGCAATCTTGGTATCGGAGTGGC 1378
consensus_3510#1 TGCTCAGAAAGGCTACAAATTCATCGCTGTCATGCCTGCTAAACTC----TCGATAGATA 66
* * * * *** * * **** * ** ** ***
consensus_3510#0 GTTTGTTGCTGCTCAGAAAGGTCAGATGTAACATGCTAGTCTCCTGCAGACCCTGCACTG 1438
consensus_3510#1 AACAGATCCTGTTGAGATACTTGGGAGTTGAAGTGATATTG----GTTGACCCTGCACTG 122
* * *** * *** * * ** * * ** ** * * ************
consensus_3510#0 AATGGATTCAAGGGGCTACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTG 1498
consensus_3510#1 AATGGATTCAAGGGGATACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTG 182
*************** ********************************************
consensus_3510#0 TTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCGCACTTCAGATGGACAGGA 1558
consensus_3510#1 TTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCACATTTCAGATGGACAGGA 242
***************************************** ** ***************
consensus_3510#0 CCTGAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCA 1618
consensus_3510#1 CCTTAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCA 302
*** ********************************************************
consensus_3510#0 GGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTG 1678
consensus_3510#1 GGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTG 362
************************************************************
consensus_3510#0 ATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAAC 1738
consensus_3510#1 ATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAAC 422
************************************************************
consensus_3510#0 ATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAG 1798
consensus_3510#1 ATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAG 482
************************************************************
consensus_3510#0 ATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAGGTTGGCAAGGGAAGAA 1858
consensus_3510#1 ATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGTAAGAAGGTTGGCGAGGGAAGAA 542
************************************* ************ *********
consensus_3510#0 GGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCA 1918
consensus_3510#1 GGATTGCTCGTTGGAATATCTTCAGGGGCAAATGCAGCTGCCATCTTGAAGGTTGCTGCA 602
************************** ** ** *********************** ***
consensus_3510#0 AGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATAC 1978
consensus_3510#1 AGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTNCAGTGGTGGGGAGAGATAC 662
**************************************** *******************
consensus_3510#0 CTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAGGCATTC 2038
consensus_3510#1 CTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAAGCATTC 722
***************************************************** ******
consensus_3510#0 TGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGCTTCATTCTTGGTGGTT 2098
consensus_3510#1 TGCTGACATGTGTAGGGGTGATCATGCAGNGTAATCTTCAAGGCTTCATTCTTGGGGGGT 782
***************************** ************************* ** *
consensus_3510#0 GTTCTACTCTAATATTGTAAGAAGCTTCTGTACATTGGTGTTATTACTCTTAGATTAGAA 2158
consensus_3510#1 GGTCTACTCTAA-ATTGGAAGAAGCTTCTGGGCATTGGGGGTANTACTCTTANATAN--- 838
* ********** **** ************ ****** * ** ******** **
consensus_3510#0 TCAATTGTATGG 2170
consensus_3510#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||