These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCAAATCGATCCGCTCGCCGCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTTCTTTTTGGTACGCGCACAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATCGCGCTGTCGGCGGGCATGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTACGCCGCGCTCATGGCCGGCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTGGCGCCCTTCTAATCTGCGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCGA] [+] EMBL CA754283 [GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCAAATCGATCCGCTCGCCGCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTTCTTTTTGGTACGCGCACAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATCGCGCTGTCGGCGGGCATGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTACGCCGCGCTCATGGCCGGCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTGGCGCCCTTCTAATCTGCGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCGA] consensusID : consensus_3516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCNCGGGG] [+] EMBL AU070252 [CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCNCGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3516#0 ----------------GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGC 44 consensus_3516#1 CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGC 60 ******************************************** consensus_3516#0 CGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTG 104 consensus_3516#1 CGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTG 120 ************************************************************ consensus_3516#0 CGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCA 164 consensus_3516#1 CGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACA------------------- 161 ***************************************** consensus_3516#0 AATCGATCCGCTCGCCGCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTT 224 consensus_3516#1 ------------------------------------------------------------ consensus_3516#0 CTTTTTGGTACGCGCACAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTG 284 consensus_3516#1 -------------------ATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTG 202 ***************************************** consensus_3516#0 GACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCC 344 consensus_3516#1 GACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCC 262 ************************************************************ consensus_3516#0 CTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATC 404 consensus_3516#1 CTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCNCGGGG--------------- 307 *************************************** ***** consensus_3516#0 GCGCTGTCGGCGGGCATGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTAC 464 consensus_3516#1 ------------------------------------------------------------ consensus_3516#0 GCCGCGCTCATGGCCGGCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTG 524 consensus_3516#1 ------------------------------------------------------------ consensus_3516#0 GCGCCCTTCTAATCTGCGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCG 584 consensus_3516#1 ------------------------------------------------------------ consensus_3516#0 A 585 consensus_3516#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||