cluster # 3516

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Oryza sativa
cluster # 3516 cluster # 3516 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3516#0 length = 585 sequences # 1

consensus_3516#1 length = 307 sequences # 1

consensusID : consensus_3516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCAAATCGATCCGCTCGCCGCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTTCTTTTTGGTACGCGCACAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATCGCGCTGTCGGCGGGCATGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTACGCCGCGCTCATGGCCGGCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTGGCGCCCTTCTAATCTGCGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCGA]

[+] EMBL CA754283             [GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCAAATCGATCCGCTCGCCGCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTTCTTTTTGGTACGCGCACAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATCGCGCTGTCGGCGGGCATGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTACGCCGCGCTCATGGCCGGCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTGGCGCCCTTCTAATCTGCGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCGA]




>consensus_3516#0
GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTC
GACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCC
CTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCAAATCGATCCGCTCGCC
GCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTTCTTTTTGGTACGCGCA
CAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCG
ACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGG
CGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATCGCGCTGTCGGCGGGCA
TGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTACGCCGCGCTCATGGCCG
GCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTGGCGCCCTTCTAATCTG
CGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCGA

consensusID : consensus_3516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCNCGGGG]

[+] EMBL AU070252             [CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGCCGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTGCGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCNCGGGG]




>consensus_3516#1
CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGC
CGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTG
CGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAATCGGGGCGTGATGAGCGG
GGCGCAGAAGTTCGTGCAGCTGGACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCAT
CGGGGCGACGAGCATCTACTCCCTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCG
CNCGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3516#0      ----------------GACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGC 44
consensus_3516#1      CCCAGCCATGAAGAATGACGACGACGTCGAGTCGCCGCTCCTCGCCGCCGCCGCCGACGC 60
                                      ********************************************

consensus_3516#0      CGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTG 104
consensus_3516#1      CGACCACCACGACGTCGACAACAGCCACCCCGCCGCCGGCTCCTCCTTCGCCCTCGCCTG 120
                      ************************************************************

consensus_3516#0      CGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACAGTAATCTACCCAAATCCCA 164
consensus_3516#1      CGCCGTCGCCGCCTCCCTCACCTCCATCATCTACGGCTACA------------------- 161
                      *****************************************                   

consensus_3516#0      AATCGATCCGCTCGCCGCCGCCGCGCCGCCATGGCCGCTTATTGCTAAGGTTTTCCTCTT 224
consensus_3516#1      ------------------------------------------------------------
                                                                                  

consensus_3516#0      CTTTTTGGTACGCGCACAGATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTG 284
consensus_3516#1      -------------------ATCGGGGCGTGATGAGCGGGGCGCAGAAGTTCGTGCAGCTG 202
                                         *****************************************

consensus_3516#0      GACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCC 344
consensus_3516#1      GACCTGGGCGTGAGCGACGCGGAGATCGAGGTGCTCATCGGGGCGACGAGCATCTACTCC 262
                      ************************************************************

consensus_3516#0      CTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCGCGGGGCGCCGCCGCACCATC 404
consensus_3516#1      CTCGTCGGCTCGCTGGCGGCGGGGTGGGCGTGCGACCGCNCGGGG--------------- 307
                      *************************************** *****               

consensus_3516#0      GCGCTGTCGGCGGGCATGTTCCTCGNCGGNTCCGCCGCCAACGCCGCGGCGAGCGGCTAC 464
consensus_3516#1      ------------------------------------------------------------
                                                                                  

consensus_3516#0      GCCGCGCTCATGGCCGGCCAGTTCGTCGCCGGGGGCGCCGGAGGGTTCGGCCTCCTCGTG 524
consensus_3516#1      ------------------------------------------------------------
                                                                                  

consensus_3516#0      GCGCCCTTCTAATCTGCGAGATTGCGCGGCGGTGGCGGGGGGTTCCTCGGCTCAATCCCG 584
consensus_3516#1      ------------------------------------------------------------
                                                                                  

consensus_3516#0      A 585
consensus_3516#1      -