These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence [CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCCAAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAACAACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCNCCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN] [+] EMBL BE229265 [CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCCAAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAACAACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCNCCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN] consensusID : consensus_3517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG] [-] EMBL BI806370 [TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3517#0 CTGCAAAATTGTACTGCATCAAAA-TGGTTTATTACTGATCGATCGTCTCTCGATCTGAA 59 consensus_3517#1 -TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAA 59 * ** ***** ******* *********************************** consensus_3517#0 TTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTT 119 consensus_3517#1 TTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTT- 118 *********************************************************** consensus_3517#0 GACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAG-TG 178 consensus_3517#1 GACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTG 178 ********************************************************* ** consensus_3517#0 GCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAG 238 consensus_3517#1 GCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAG 238 **************************************** ******************* consensus_3517#0 CTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGG 298 consensus_3517#1 CTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGG 298 *********** ************************************************ consensus_3517#0 CGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGG 358 consensus_3517#1 CGGCGGCGGCGGG-GCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGG 357 ************ ** * *** * ******** **** * * ** ***** *** **** consensus_3517#0 CCAAGAAGCTGGCCGC-CATGGGGTTCCGGGCCCCCCGCCCG-CGGGTT-CTGCCGGGTT 415 consensus_3517#1 CGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTT 417 * * ** ****** ** ** ***** * ****** * ** ** ****** **** ***** consensus_3517#0 GCAACAACAAGTTCCGCGGCGAAAGCGAAG-CGAAGCCGAANGGCTTGCCATNGANTTCG 474 consensus_3517#1 GCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCG 477 ***** * * ** * * * *** * * ** ** ** ** * ** ** *** ** *** consensus_3517#0 GGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTC---CCTGAAAGACTT-------TTNG 524 consensus_3517#1 GGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGG 537 *** * * **** ** * * ** * * **** **** * * * consensus_3517#0 TACCCCCCCCTTGNCNCCAAAA--GAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCT 582 consensus_3517#1 ACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGA-CCTACTGGGGTGAAGCT 596 ***** ** * * ** ** *** *** *** ** *** ***** consensus_3517#0 NANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGC 642 consensus_3517#1 CAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG------------------- 637 * * * * * *** * * *** * consensus_3517#0 CCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTT 702 consensus_3517#1 ------------------------------------------------------------ consensus_3517#0 TACCCANTCCCNAAN 717 consensus_3517#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||