These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCGCCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGGCGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCGCCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAGGGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTTCACCTGCAAGGGTCGTGCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGGCATTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATATGCTAGACAACACATTTATCTATCA] [+] EMBL CB618541 [GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCGCCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGGCGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCGCCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAGGGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTTCACCTGCAAGGGTCGTGCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGGCATTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATATGCTAGACAACACATTTATCTATCA] consensusID : consensus_3531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GCCTCCGCCGCCACCGGCGGCGGAGGAGGGAAAGGGCGGCTACCCTTTCCGTCGGCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTACTCTTTCAGCAAGGGGGGGACCAAATGAAGAGTAGTGCACTCGGGAGGAGGTGTTCCAAGACACCAGCTTCATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGCA] [+] EMBL D42372 [GCCTCCGCCGCCACCGGCGGCGGAGGAGGGAAAGGGCGGCTACCCTTTCCGTCGGCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTACTCTTTCAGCAAGGGGGGGACCAAATGAAGAGTAGTGCACTCGGGAGGAGGTGTTCCAAGACACCAGCTTCATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3531#0 GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCG 60 consensus_3531#1 ------------------------------------------------------------ consensus_3531#0 CCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGG 120 consensus_3531#1 ------------------------------------------------------------ consensus_3531#0 CGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCG 180 consensus_3531#1 -----------------------------------------------GCCTCCGCCGCCA 13 ************ consensus_3531#0 CCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGA 240 consensus_3531#1 CCGGCGGCGGA--GGAGGGAAAGGGCGG-CTACCCTTTCCGTCGGCGGACGTGATGGAGA 70 *** ** **** ********** **** ** ***** * **** *************** consensus_3531#0 CGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAG 300 consensus_3531#1 CGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTA-CTCTTTCAGCAAG 129 ************************* ****************** * ** ** ******* consensus_3531#0 GGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTT 360 consensus_3531#1 GGGGGGACCAAATGAAGAGTAGTGCA-CTCGGGAGGAGG--TGTTCCAAGACACCAGCTT 186 ** ** ************ ** **** * ******* * ***** **** ******* consensus_3531#0 CACCTGCAAGGG-TCGT-GCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGG 418 consensus_3531#1 CATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGCA----- 241 ** ********* **** ******* ******** ******** *** * *** consensus_3531#0 CATTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATA 478 consensus_3531#1 ------------------------------------------------------------ consensus_3531#0 TGCTAGACAACACATTTATCTATCA 503 consensus_3531#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||