cluster # 3539

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3539 cluster # 3539 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3539#0 length = 1290 sequences # 1

consensus_3539#1 length = 506 sequences # 1

consensusID : consensus_3539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1290
fasta sequence

                              [TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAGCCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTCGCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCGTCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATATCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTGTCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGCTTGGTGACGTAATTTGATTACCTTTTGAAGTGATGAGGATGAATTGACAATTTTCCACTGGTTTTAGCATATGAGTGCACTGTGGTATGTTGCTATACACGAGCTCACAGGGATCAGGGACGCTAGAGCACTCGGGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTGGGGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGTCTTTTTCGTATATTGGGATCCAAGTGTGAAGATGGCGATCCAGATGGTGTGGTAGCATCAAGCATGGAAGATGGAGCTGTTGATAAACACATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAATTGCATAAGCACTTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAGTGCATCGAGGCTACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAACTTTCTTCTACTTCAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTGTGCTACCTGGTGTATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATATGTGGTGTGGTGTGGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTACGCTTACGCTCGGAGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTGGACGGACGGACGGACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTTGTTTTTCCTACTACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGACCAGCATGTTCATATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATTTCTGAAGAAAAATATCTATCTATCTATCTATCTATCTATCTA]

[+] EMBL AK072908             [TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAGCCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTCGCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCGTCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATATCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTGTCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGCTTGGTGACGTAATTTGATTACCTTTTGAAGTGATGAGGATGAATTGACAATTTTCCACTGGTTTTAGCATATGAGTGCACTGTGGTATGTTGCTATACACGAGCTCACAGGGATCAGGGACGCTAGAGCACTCGGGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTGGGGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGTCTTTTTCGTATATTGGGATCCAAGTGTGAAGATGGCGATCCAGATGGTGTGGTAGCATCAAGCATGGAAGATGGAGCTGTTGATAAACACATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAATTGCATAAGCACTTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAGTGCATCGAGGCTACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAACTTTCTTCTACTTCAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTGTGCTACCTGGTGTATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATATGTGGTGTGGTGTGGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTACGCTTACGCTCGGAGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTGGACGGACGGACGGACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTTGTTTTTCCTACTACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGACCAGCATGTTCATATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATTTCTGAAGAAAAATATCTATCTATCTATCTATCTATCTATCTA]




>consensus_3539#0
TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAG
CCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTC
GCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCG
TCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATA
TCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTG
TCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGC
TTGGTGACGTAATTTGATTACCTTTTGAAGTGATGAGGATGAATTGACAATTTTCCACTG
GTTTTAGCATATGAGTGCACTGTGGTATGTTGCTATACACGAGCTCACAGGGATCAGGGA
CGCTAGAGCACTCGGGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTGGGGAGTC
ATTTGCGCATATCGCTCCCGATCTCTCTGTCTTTTTCGTATATTGGGATCCAAGTGTGAA
GATGGCGATCCAGATGGTGTGGTAGCATCAAGCATGGAAGATGGAGCTGTTGATAAACAC
ATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAATTGCATAAGCAC
TTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAGTGCATCGAGGCT
ACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAACTTTCTTCTACTT
CAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTGTGCTACCTGGTG
TATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATATGTGGTGTGGTGT
GGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTACGCTTACGCTCGG
AGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTGGACGGACGGACG
GACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTTGTTTTTCCTACT
ACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGACCAGCATGTTCAT
ATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATTTCTGAAGAAAAA
TATCTATCTATCTATCTATCTATCTATCTA

consensusID : consensus_3539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TTTTTGGAATTGAACCCTTATCCTGGCTTGCAATTTCTTGTTCTGCTTGCCCGGAATGTGTAGCATGCAATGGCTCCTCCACATTGGCAAGGGCATTTAAATCTTTGTTGCGCTTATAGGCTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTGGAGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCCAAAAGTGGAGATGGCGATCCAAATGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCTTGACCATCAAACATATCACTCTCATTGGTGTCATCGTCAAATATATCTTCATCACCATCGATGAATACTTGTGATGGATGCTCTACATTGTCGGCACCTTGATTTGTTAAACACATATTTTCGGTATTTGTATATGCTTGGCTCCTTAGGAGGGTCTATGCTGTTGGATGTTCTGTGTGCATATCGAAGGATCTTCTCCTAGGTGACACAGAAGTTCTCGTGTACCATC]

[-] EMBL BI804587             [TTTTTGGAATTGAACCCTTATCCTGGCTTGCAATTTCTTGTTCTGCTTGCCCGGAATGTGTAGCATGCAATGGCTCCTCCACATTGGCAAGGGCATTTAAATCTTTGTTGCGCTTATAGGCTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTGGAGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCCAAAAGTGGAGATGGCGATCCAAATGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCTTGACCATCAAACATATCACTCTCATTGGTGTCATCGTCAAATATATCTTCATCACCATCGATGAATACTTGTGATGGATGCTCTACATTGTCGGCACCTTGATTTGTTAAACACATATTTTCGGTATTTGTATATGCTTGGCTCCTTAGGAGGGTCTATGCTGTTGGATGTTCTGTGTGCATATCGAAGGATCTTCTCCTAGGTGACACAGAAGTTCTCGTGTACCATC]




>consensus_3539#1
TTTTTGGAATTGAACCCTTATCCTGGCTTGCAATTTCTTGTTCTGCTTGCCCGGAATGTG
TAGCATGCAATGGCTCCTCCACATTGGCAAGGGCATTTAAATCTTTGTTGCGCTTATAGG
CTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTGGAGAGTCATTTGCGCATATCGCT
CCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCCAAAAGTGGAGATGGCGATCCAAA
TGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCTTGACCATCAAACATATCACTCTC
ATTGGTGTCATCGTCAAATATATCTTCATCACCATCGATGAATACTTGTGATGGATGCTC
TACATTGTCGGCACCTTGATTTGTTAAACACATATTTTCGGTATTTGTATATGCTTGGCT
CCTTAGGAGGGTCTATGCTGTTGGATGTTCTGTGTGCATATCGAAGGATCTTCTCCTAGG
TGACACAGAAGTTCTCGTGTACCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3539#0      TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAG 60
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      CCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTC 120
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      GCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCG 180
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      TCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATA 240
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      TCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTG 300
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      TCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGC 360
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      TTGGTGACGTAATTTGATTACCTTTTGAAGTGA----TGAGGATGAATTGACAATTTTCC 416
consensus_3539#1      --------------------TTTTTGGAATTGAACCCTTATCCTGGCTTG-CAATTTCTT 39
                                            *** *** ***    * *   **  *** ******   

consensus_3539#0      ACTGGTTTTAGCATATGAGTGCACTGTGGTATG-TTGCTATACACGAGCTCACAGGGATC 475
consensus_3539#1      GTTCTGCTTGCCCGGAATGTGTAGCATGCAATGGCTCCTCCACATTGGC--AAGGGCATT 97
                        *    **  *      *** *   **  ***  * **  ***   **  *  ** ** 

consensus_3539#0      AGGGACGCTAGAGCACTCG--GGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTG 533
consensus_3539#1      TAAATCTTTGTTGCGCTTATAGGCTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTG 157
                           *  *   ** **    ***** *** ********** ******************

consensus_3539#0      GGGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGTC--TTTTTCGTATATTGGGATCC 591
consensus_3539#1      GAGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCC 217
                      * **********************************    ** ********** ******

consensus_3539#0      AAGTGTGAAGATGGCGATCCAGATGGTGTGGTA---GCATCAAGCATGGAAGATGGAGCT 648
consensus_3539#1      AAAAGTGGAGATGGCGATCCAAATGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCT 277
                      **  *** ************* *** *******   ************************

consensus_3539#0      GTTGATAAACACATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAA 708
consensus_3539#1      --TGACCATCAAACATATCACTCTCATTGGTGTCATCGTCAAATATATCTTCATC-ACCA 334
                        ***  * ** * ****       ** *      *  *  **    *     *  ** *

consensus_3539#0      TTGCATAAGCACTTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAG 768
consensus_3539#1      TCG-ATGAATACTTGTGATG---GATGCTCTACATTGTCGGCACCTTGATTTGTTAAACA 390
                      * * ** *  *****  * *    * * ** **   *     *     * *  * **   

consensus_3539#0      TGCATCGAGGCTACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAAC 828
consensus_3539#1      CATATTTTCGGTATTTG--TATATGCTTG-GCTCCTTAGGAGGGTCTATGCTGTTGGATG 447
                         **    * **  **   * ** ***  * *    * * * **   **   **  *  

consensus_3539#0      TTTCTTCTACTTCAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTG 888
consensus_3539#1      TTCTGTGTGCAT-----ATCGAAGGATCTTCTCCTAGGTGAC-ACAGAAGTT--CTCGTG 499
                      **   * * * *          * ***    * ** * **    * *  * *  **  **

consensus_3539#0      TGCTACCTGGTGTATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATAT 948
consensus_3539#1      TACCATC----------------------------------------------------- 506
                      * * * *                                                     

consensus_3539#0      GTGGTGTGGTGTGGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTAC 1008
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      GCTTACGCTCGGAGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTG 1068
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      GACGGACGGACGGACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTT 1128
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      GTTTTTCCTACTACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGAC 1188
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      CAGCATGTTCATATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATT 1248
consensus_3539#1      ------------------------------------------------------------
                                                                                  

consensus_3539#0      TCTGAAGAAAAATATCTATCTATCTATCTATCTATCTATCTA 1290
consensus_3539#1      ------------------------------------------