These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAATTAATTGGGCCCGCACCTTTTACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCATGACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA] [+] EMBL BI306454 [CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAATTAATTGGGCCCGCACCTTTTACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCATGACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA] consensusID : consensus_3540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAATTAATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCCTGAGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG] [+] EMBL BI305742 [AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAATTAATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCCTGAGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3540#0 CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAA 60 consensus_3540#1 --AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAA 58 *** ************** ******** * ******* ** *** * **** ****** consensus_3540#0 TTAATTGGGCCCGCACCTTTT-ACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCA 119 consensus_3540#1 TTAATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCC 118 ********************* **** ********************* ***** *** consensus_3540#0 TGACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA 168 consensus_3540#1 TGAGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG 167 *** **** *** ************** * ** ** ****** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||