These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1523 fasta sequence [CGTATTTCCCTTTTTTCTTTTTCCTATCCCAATTGGGCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGTCATCCACTTCCATGTCAGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCAGCCGGAGCCCGCGGCCGCGTCGGCTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGCGTCGCTCGCCGTCCGGGGAGGCATGCAGCTCTTCAGGCAGGGAGATGTAGCTGGCTCAGTAGCAGAGTTCGATCGGGCAATTGAGCTCGATCAGCGGCAGAAGAAATGTATGTATTTGTAACACTTCAAAGTTCAGATTTCAGAGTGTGAGTCAGCAATGTACAACTGGCTGCAATTGTGCTTTGTTTCAGATCTCTGGCAAAGGGGGCTTTCACTCTACTACCTGGACAGGTGCATTATCATGATAGTAACTAGGTTCATAGATTCTGGAAACTGAACCAAATAATTTCAAGCCATGGACTGAAATTAAACCATGTGTAACCATCTCTTTTATCCTTGGTTTAATTGATCGAAATTCTGGGATAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGATATGGTGCTTTCTCTGTGAAGCTCAGCTGTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTAGACTCAAGGTCTGTAATGCGAGAAGCTTATGCACTGTTCAAAGATGGTGGGGACCCTGAAAAGGTTGTTTGATTTGATGATAAATGAACATATCTCACCTGTTCTTACAAATTTCTGATAAACATTTACGCTAGTTTTCTTTTTCATCTTCAGTTGGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACTGGACTTTACTATGAATCTCAGAAGGATGCAGAGTTGGCAAAGTCCCACATTGTTGCTGCATGCAGGTCACCATATGGATCAAGGTCCGGTGATTACATGGCTTCACTTGCACTAGTTCATTGTCAATGCCGCAACTGGACTCTGGAGTGACAGAAGTATTATACAAACAAGTGGACCTAAACATTCTTGTTGAAGCCAACAGATAGGAAGCATCTTGGGTATGTTCTTCCCATGGCTCACTGTATTTAACTGGACTTCTTGGTCTCAAATTTTTGTAGATTTGGTAAATAGCACATTGCCACTCACAGTCAATGACGTAACGGCTCTTATGTGTCTATGACATGTAGATCCAGTAACAAATCCTAAATTGTCATTTGTAAGAGTGGCAATTAGTTAAATATCTCGCGTGATCTGGACTCTTCCTCTTCTTTTTTTCCCTTTTAACGAGACTGAAATGGCTGATCAAACACGGTGGAAGCATTTTAAAGATTCAACCTCTGAGAAAG] [+] EMBL AK071988 [CGTATTTCCCTTTTTTCTTTTTCCTATCCCAATTGGGCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGTCATCCACTTCCATGTCAGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCAGCCGGAGCCCGCGGCCGCGTCGGCTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGCGTCGCTCGCCGTCCGGGGAGGCATGCAGCTCTTCAGGCAGGGAGATGTAGCTGGCTCAGTAGCAGAGTTCGATCGGGCAATTGAGCTCGATCAGCGGCAGAAGAAATGTATGTATTTGTAACACTTCAAAGTTCAGATTTCAGAGTGTGAGTCAGCAATGTACAACTGGCTGCAATTGTGCTTTGTTTCAGATCTCTGGCAAAGGGGGCTTTCACTCTACTACCTGGACAGGTGCATTATCATGATAGTAACTAGGTTCATAGATTCTGGAAACTGAACCAAATAATTTCAAGCCATGGACTGAAATTAAACCATGTGTAACCATCTCTTTTATCCTTGGTTTAATTGATCGAAATTCTGGGATAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGATATGGTGCTTTCTCTGTGAAGCTCAGCTGTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTAGACTCAAGGTCTGTAATGCGAGAAGCTTATGCACTGTTCAAAGATGGTGGGGACCCTGAAAAGGTTGTTTGATTTGATGATAAATGAACATATCTCACCTGTTCTTACAAATTTCTGATAAACATTTACGCTAGTTTTCTTTTTCATCTTCAGTTGGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACTGGACTTTACTATGAATCTCAGAAGGATGCAGAGTTGGCAAAGTCCCACATTGTTGCTGCATGCAGGTCACCATATGGATCAAGGTCCGGTGATTACATGGCTTCACTTGCACTAGTTCATTGTCAATGCCGCAACTGGACTCTGGAGTGACAGAAGTATTATACAAACAAGTGGACCTAAACATTCTTGTTGAAGCCAACAGATAGGAAGCATCTTGGGTATGTTCTTCCCATGGCTCACTGTATTTAACTGGACTTCTTGGTCTCAAATTTTTGTAGATTTGGTAAATAGCACATTGCCACTCACAGTCAATGACGTAACGGCTCTTATGTGTCTATGACATGTAGATCCAGTAACAAATCCTAAATTGTCATTTGTAAGAGTGGCAATTAGTTAAATATCTCGCGTGATCTGGACTCTTCCTCTTCTTTTTTTCCCTTTTAACGAGACTGAAATGGCTGATCAAACACGGTGGAAGCATTTTAAAGATTCAACCTCTGAGAAAG] consensusID : consensus_3542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [ACACCTTCTACACGATGATTTGAAAAGCGTATTTCCGTTTTTCTTTTCTTATCCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGGCATCCACTTCCATGTCTGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCGGCCGGAACCCGCGGCCGCGTCGGGTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGTATCGCTCGCCGACCGGCGAGGCATGCAGCTCTTCAGACAGGGAGATGTAGCCGGGTCAGTAGCAGAGTTCCATCGGGCGATTGAGCTGGATCAACGACAGAAGCAATATCTCTGGCAAAGGGGGCTTTCACTCTACTACATGGACAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGTTATGGTGCTTTCTCTGTGAAGCACAGCTTTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTACACTCAAGGTCTGTAATGCGCGAAGCTTATGCTCTGTTCAAAGATGGTGGGGACCCTGAAAAGTTAGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACCG] [+] EMBL CB619085 [ACACCTTCTACACGATGATTTGAAAAGCGTATTTCCGTTTTTCTTTTCTTATCCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGGCATCCACTTCCATGTCTGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCGGCCGGAACCCGCGGCCGCGTCGGGTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGTATCGCTCGCCGACCGGCGAGGCATGCAGCTCTTCAGACAGGGAGATGTAGCCGGGTCAGTAGCAGAGTTCCATCGGGCGATTGAGCTGGATCAACGACAGAAGCAATATCTCTGGCAAAGGGGGCTTTCACTCTACTACATGGACAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGTTATGGTGCTTTCTCTGTGAAGCACAGCTTTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTACACTCAAGGTCTGTAATGCGCGAAGCTTATGCTCTGTTCAAAGATGGTGGGGACCCTGAAAAGTTAGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3542#0 -------------------CGTATTTCCCTTTTTTCTTTTTCCTATCCCAATTGGGCATT 41 consensus_3542#1 ACACCTTCTACACGATGATTTGAAAAGCGTATTTCCGTTTTTCTTTTCTTATC---CATT 57 * * * *** * **** ** * * ** **** consensus_3542#0 TGGTAAACGGAGTTCGCTTCCCTCCAAAATGTCATCCACTTCCATGTCAGTCCGTTCTCC 101 consensus_3542#1 TGGTAAACGGAGTTCGCTTCCCTCCAAAATGGCATCCACTTCCATGTCTGTCCGTTCTCC 117 ******************************* **************** *********** consensus_3542#0 GGCGTCCTTCCCCTTCCCCACGGCAGCCGGAGCCCGCGGCCGCGTCGGCTCGGCGCAGCC 161 consensus_3542#1 GGCGTCCTTCCCCTTCCCCACGGCGGCCGGAACCCGCGGCCGCGTCGGGTCGGCGCAGCC 177 ************************ ****** **************** *********** consensus_3542#0 GGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCG 221 consensus_3542#1 GGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCG 237 ************************************************************ consensus_3542#0 CCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGG 281 consensus_3542#1 CCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGG 297 ************************************************************ consensus_3542#0 CGGCGCGGCTGCCGCGTCGCTCGCCGTCCGGGGAGGCATGCAGCTCTTCAGGCAGGGAGA 341 consensus_3542#1 CGGCGCGGCTGCCGTATCGCTCGCCGACCGGCGAGGCATGCAGCTCTTCAGACAGGGAGA 357 ************** ********** **** ******************* ******** consensus_3542#0 TGTAGCTGGCTCAGTAGCAGAGTTCGATCGGGCAATTGAGCTCGATCAGCGGCAGAAGAA 401 consensus_3542#1 TGTAGCCGGGTCAGTAGCAGAGTTCCATCGGGCGATTGAGCTGGATCAACGACAGAAGCA 417 ****** ** *************** ******* ******** ***** ** ****** * consensus_3542#0 ATGTATGTATTTGTAACACTTCAAAGTTCAGATTTCAGAGTGTGAGTCAGCAATGTACAA 461 consensus_3542#1 AT---------------------------------------------------------- 419 ** consensus_3542#0 CTGGCTGCAATTGTGCTTTGTTTCAGATCTCTGGCAAAGGGGGCTTTCACTCTACTACCT 521 consensus_3542#1 --------------------------ATCTCTGGCAAAGGGGGCTTTCACTCTACTACAT 453 ******************************** * consensus_3542#0 GGACAGGTGCATTATCATGATAGTAACTAGGTTCATAGATTCTGGAAACTGAACCAAATA 581 consensus_3542#1 GGACAGGT---------------------------------------------------- 461 ******** consensus_3542#0 ATTTCAAGCCATGGACTGAAATTAAACCATGTGTAACCATCTCTTTTATCCTTGGTTTAA 641 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 TTGATCGAAATTCTGGGATAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGC 701 consensus_3542#1 -----------------------TCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGC 498 ************************************* consensus_3542#0 TGCCAACCCGAATGACACTGAGGAGTCGATATGGTGCTTTCTCTGTGAAGCTCAGCTGTA 761 consensus_3542#1 TGCCAACCCGAATGACACTGAGGAGTCGTTATGGTGCTTTCTCTGTGAAGCACAGCTTTA 558 **************************** ********************** ***** ** consensus_3542#0 TGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTAGACTCAAGGTCTGTAAT 821 consensus_3542#1 TGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTACACTCAAGGTCTGTAAT 618 ******************************************* **************** consensus_3542#0 GCGAGAAGCTTATGCACTGTTCAAAGATGGTGGGGACCCTGAAAAGGTTGTTTGATTTGA 881 consensus_3542#1 GCGCGAAGCTTATGCTCTGTTCAAAGATGGTGGGGACCCTGAAAAGTTAGCTT------- 671 *** *********** ****************************** * * ** consensus_3542#0 TGATAAATGAACATATCTCACCTGTTCTTACAAATTTCTGATAAACATT-TACGCTAGTT 940 consensus_3542#1 ---CAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACCG--- 725 **** ** *** * ** ***** * * **** *** * consensus_3542#0 TTCTTTTTCATCTTCAGTTGGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCT 1000 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 ATTCATCATTATACACTGGACTTTACTATGAATCTCAGAAGGATGCAGAGTTGGCAAAGT 1060 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 CCCACATTGTTGCTGCATGCAGGTCACCATATGGATCAAGGTCCGGTGATTACATGGCTT 1120 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 CACTTGCACTAGTTCATTGTCAATGCCGCAACTGGACTCTGGAGTGACAGAAGTATTATA 1180 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 CAAACAAGTGGACCTAAACATTCTTGTTGAAGCCAACAGATAGGAAGCATCTTGGGTATG 1240 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 TTCTTCCCATGGCTCACTGTATTTAACTGGACTTCTTGGTCTCAAATTTTTGTAGATTTG 1300 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 GTAAATAGCACATTGCCACTCACAGTCAATGACGTAACGGCTCTTATGTGTCTATGACAT 1360 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 GTAGATCCAGTAACAAATCCTAAATTGTCATTTGTAAGAGTGGCAATTAGTTAAATATCT 1420 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 CGCGTGATCTGGACTCTTCCTCTTCTTTTTTTCCCTTTTAACGAGACTGAAATGGCTGAT 1480 consensus_3542#1 ------------------------------------------------------------ consensus_3542#0 CAAACACGGTGGAAGCATTTTAAAGATTCAACCTCTGAGAAAG 1523 consensus_3542#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||