These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACATCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATCGAGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTGGTCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCTCTGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTTTTATCCCAAAAAA] [+] EMBL BI803165 [GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACATCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATCGAGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTGGTCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCTCTGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTTTTATCCCAAAAAA] consensusID : consensus_3543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATCGAGTGGCGCTCCAGGTTTATCATCACCTTAACAGGTTGACCTGATCAAGAAATGAGTGGTCAATGGAGGACCCACTCACCTTTGATAGTCTCGCCCCTCAGAGTACAGTCACCTCTGCCGGGTTACCCAGGTAACTTGTCCCAAATCGAGGAATTATCTGAGAACTTAGTTTTACCCCCAAAAAA] [+] EMBL BI803924 [AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATCGAGTGGCGCTCCAGGTTTATCATCACCTTAACAGGTTGACCTGATCAAGAAATGAGTGGTCAATGGAGGACCCACTCACCTTTGATAGTCTCGCCCCTCAGAGTACAGTCACCTCTGCCGGGTTACCCAGGTAACTTGTCCCAAATCGAGGAATTATCTGAGAACTTAGTTTTACCCCCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3543#0 GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACAT-CAAC 59 consensus_3543#1 -AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAAC 59 ************************************* **************** **** consensus_3543#0 ACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCC 119 consensus_3543#1 ACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCC 119 ************************************************************ consensus_3543#0 AAATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATC 179 consensus_3543#1 AAATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATC 179 ************************************ ********* ************* consensus_3543#0 GAGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTG 239 consensus_3543#1 GAGTGGCGCTCCAGGTTTATCATCACCT-TAACAGGTT-GACCTGATCAAGAAATGAGTG 237 *********** *************** ********* **** *********** consensus_3543#0 GTCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCT 299 consensus_3543#1 GTCAATGGAGGACCCACTCACCTTTGATAG-TCTCGCCCC-TCAGAGT--ACAGTCACCT 293 ******* * ***************** ***** *** ****** ********** consensus_3543#0 CTGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTT 359 consensus_3543#1 CTGCCGGGTTAC-CCAGGTAACTTGTCCCAAATCGAGGAAT-TATCTGAG-AACTTAGTT 350 *** ******* *** ************** ***** ******** ********* consensus_3543#0 TTATCCCAAAAAA- 372 consensus_3543#1 TTACCCCCAAAAAA 364 *** *** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||