cluster # 3567

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Oryza sativa
cluster # 3567 cluster # 3567 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3567#0 length = 765 sequences # 1

consensus_3567#1 length = 370 sequences # 1

consensusID : consensus_3567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [CGACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCAGCGCCGTCGCCGCCGGCGAAACCGACACCGCTATAGATCAATTGCTAAATTGGGTAAAAGGAAATTCTCGCCCTCCCAACAAGATGATGATTCTCAGGGTGCTAAAAGAATGAAAAATTCAGGGATGTTGCTTTCAAAGGACATCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGTGTCTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATACGCTGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCTTAAAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGATGTCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACTCACTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGATGGGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAATCGAACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGAGGATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG]

[+] EMBL CB621044             [CGACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCAGCGCCGTCGCCGCCGGCGAAACCGACACCGCTATAGATCAATTGCTAAATTGGGTAAAAGGAAATTCTCGCCCTCCCAACAAGATGATGATTCTCAGGGTGCTAAAAGAATGAAAAATTCAGGGATGTTGCTTTCAAAGGACATCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGTGTCTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATACGCTGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCTTAAAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGATGTCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACTCACTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGATGGGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAATCGAACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGAGGATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG]




>consensus_3567#0
CGACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCT
CGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCAGCGCCGTCGCCGCCGGCGAAA
CCGACACCGCTATAGATCAATTGCTAAATTGGGTAAAAGGAAATTCTCGCCCTCCCAACA
AGATGATGATTCTCAGGGTGCTAAAAGAATGAAAAATTCAGGGATGTTGCTTTCAAAGGA
CATCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGT
GTCTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATAC
GCTGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCT
TAAAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGA
TGTCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACT
CACTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGA
TGGGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAAT
CGAACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGA
GGATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG

consensusID : consensus_3567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATAGATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCCGNCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTATTAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATGATTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACATCTTGGCCGCC]

[+] EMBL OSS14376A            [ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATAGATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTTGATTCGATTCCGGGTGTCGCCGCCGCCGNCATGGGGATAACGCTCGAGATGAACCGGGTCATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTATTAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATGATTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACATCTTGGCCGCC]




>consensus_3567#1
ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATA
GATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTT
GATTCGATTCCGGGTGTCGCCGCCGCCGNCATGGGGATAACGCTCGAGATGAACCGGGTC
ATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTAT
TAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATGA
TTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACAT
CTTGGCCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3567#0      ------------------------------------------------------------
consensus_3567#1      ATCTCCTCCTCCTCCCTCCTCGTCGCAGGATTTGCCAATAAATAGCAAGAGAGATCGATA 60
                                                                                  

consensus_3567#0      ---------------------------------------------CGACCGCGCGGAGTT 15
consensus_3567#1      GATTAGATCGAAGTAGAACAGCGGAGAAGGAGAGTAGGAGCGACGGCACCGCGCGGAGTT 120
                                                                     *************

consensus_3567#0      GATTCGATTCCGGGTGTCGCCGCCGCTGGCCATGGGGATAACGCTCGAGATGAACCGGGT 75
consensus_3567#1      GATTCGATTCCGGGTGTCGCCGCCGCCGNC-ATGGGGATAACGCTCGAGATGAACCGGGT 179
                      ************************** * * *****************************

consensus_3567#0      CATGCCCACCCGGCGGAGGCGGCAG--CGCCGTCGCCGCCGGCGAAACCGACACC-GCTA 132
consensus_3567#1      CATGCCCACCCGGCGGAGGCGGCANGCNTNCGCCGCTCNGANANANCCCGACACCCGCTA 239
                      ************************      ** ***        *  ******** ****

consensus_3567#0      T-AGATCAATTGCT-AAATTGGGTAAAAGGAAA--TTCTCGCCCTCCCAACAAGATGATG 188
consensus_3567#1      TTAGATCAATTGCTTAAATTGGGTAAAAGGGAAATTCTTCACCCTCCCAACAAGATGATG 299
                      * ************ *************** **  *  ** *******************

consensus_3567#0      ATTCTCAGGG--TGCTAAAAGAAT-GAAAAATTCAGGG-ATGTTG--CTTTCAAAGGACA 242
consensus_3567#1      ATTCTCAGGGGTTCTTAAAAGAATTGAAAAATTCAGGGGATGTTTGCTTTTCAAAGGACA 359
                      **********  *  ********* ************* *****    ************

consensus_3567#0      TCTGGCGCCGTATACATTGCCTGATGCCAATGCGAGATGCGGCTCGTGTTGCATGTGTGT 302
consensus_3567#1      TCTTG-GCCGCC------------------------------------------------ 370
                      *** * ****                                                  

consensus_3567#0      CTCGTGCCTTTCTAAATTCCTGGTTATGTTATCCAAACCTCACCTTTAACAAGGATACGC 362
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      TGGGATTGGATGAACATGTTTGTGAGACAGATTTCATCAGCAAAGTTGACCACATTCTTA 422
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      AAAGACACTCGGGCACTTGTGTGAAGACATTCAAGCTTGAAGTCCCGTATGAGCTAGATG 482
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      TCTGTGACCATGTTGATCGTTGGCTTCAATTTGCTATTACACCAGCGATCGAAGAACTCA 542
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      CTCTTACGCTGTATGGAACTGCTCAAAAGTACAATTTCCCATGCTCACTTCTATCTGATG 602
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      GGATGGCAGATTCTATTCGGATTCTTGATCTTGGCCATTGCGCCTTCTGTCCCACAATCG 662
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      AACCTGGTTCATGGAGAAGCCTTAAAAGGCTATGTTTGTCTTTTGTGCGTATCACGGAGG 722
consensus_3567#1      ------------------------------------------------------------
                                                                                  

consensus_3567#0      ATGATTTANGGTGCCTTCTTTTGAATTCGTTGGCTCTCGAGGG 765
consensus_3567#1      -------------------------------------------