These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CGCCCTTTGAGGGAGATGGACGAGGCGGCGGTGGAGAAGGTGAAGGAGATGAATAGGCTTCTCGTCAGGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCGGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCGACGAGGAACGCGCGGTGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCAGCGGCGACGCGCGCGCGCCTCGACGCCGCGCGAGAGTCGCTCGAGGCCGCGGAGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGGCGGCGGCGGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCGCCATCTCCGCCAATCTCGCTGAATCGGACGCCATGGTGGCCCAACTGGAGGAGCAGAACTCGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAGACGAAGGCGTCGTCTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGAACACCGAGAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGAAGCTTTTGACCTCCATTAAGACAGAAATGGCGGCGAAGATTGAGT] [+] EMBL CB621139 [CGCCCTTTGAGGGAGATGGACGAGGCGGCGGTGGAGAAGGTGAAGGAGATGAATAGGCTTCTCGTCAGGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCGGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCGACGAGGAACGCGCGGTGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCAGCGGCGACGCGCGCGCGCCTCGACGCCGCGCGAGAGTCGCTCGAGGCCGCGGAGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGGCGGCGGCGGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCGCCATCTCCGCCAATCTCGCTGAATCGGACGCCATGGTGGCCCAACTGGAGGAGCAGAACTCGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAGACGAAGGCGTCGTCTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGAACACCGAGAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGAAGCTTTTGACCTCCATTAAGACAGAAATGGCGGCGAAGATTGAGT] consensusID : consensus_3570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGGCTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGGAAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGGCGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGGAGGC] [+] EMBL CB679176 [GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGGCTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGGAAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGGCGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3570#0 ------------------------------------------------------------ consensus_3570#1 GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGG 60 consensus_3570#0 ------------------------------------------------------------ consensus_3570#1 CTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGG 120 consensus_3570#0 --------------------------------CGCCCTTTGAGGGAGATGGACGAGGCGG 28 consensus_3570#1 AAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGG 180 * * * ***************** consensus_3570#0 CGGTGGAGAAGGTGAAGGAGATGAATAGGCTTCTCGTCAGGGAGTCCGTCGAGGAGCGGG 88 consensus_3570#1 CGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGG 240 *** *** ******************* ******* *** ******************** consensus_3570#0 CGCGCGTTGCCGCGCTCGCCGCGGGCATCGGCGAGCTGGAGGCGGACGCCGGCGCGGTCG 148 consensus_3570#1 CGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCG 300 ***************************** ****************************** consensus_3570#0 CCGACGAGGAACGCGCGGTGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCG 208 consensus_3570#1 CCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCG 360 ** *********** *** ***************************************** consensus_3570#0 ATGAGGCAGCGGCGACGCGCGCGCGCCTCGACGCCGCGCGAGAGTCGCTCGAGGCCGCGG 268 consensus_3570#1 ATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGG 420 ******* ************************ ***************** ********* consensus_3570#0 AGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGG 328 consensus_3570#1 AGGC-------------------------------------------------------- 424 **** consensus_3570#0 CGGCGGCGGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCG 388 consensus_3570#1 ------------------------------------------------------------ consensus_3570#0 CCATCTCCGCCAATCTCGCTGAATCGGACGCCATGGTGGCCCAACTGGAGGAGCAGAACT 448 consensus_3570#1 ------------------------------------------------------------ consensus_3570#0 CGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAGACGAAGGCGTCGT 508 consensus_3570#1 ------------------------------------------------------------ consensus_3570#0 CTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGA 568 consensus_3570#1 ------------------------------------------------------------ consensus_3570#0 ACACCGAGAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGA 628 consensus_3570#1 ------------------------------------------------------------ consensus_3570#0 AGCTTTTGACCTCCATTAAGACAGAAATGGCGGCGAAGATTGAGT 673 consensus_3570#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||