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Oryza sativa
cluster # 3573 cluster # 3573       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3573#0 length = 1659 sequences # 2  

consensusID : consensus_3573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1659
fasta sequence
                              [TGTCGTTTGTAGTGAGCTCGCGTGATGAGCTTCGGTGGCATGTTCGATGGCGCCGGCTCCGGCGTCTTCTCCTACGACGCCGGCGGCGGCGGCGGCGGCGGCGGAGTACACAACTCCCGCCTCCTCCCTACGCCGCCCGTCCCCAAGCCCGGCGGCGGGTTCGCCGCTCCCGGCCTCTCTCTCGGCCTGCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATGATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTCCAGCGACAGTGCCAGTATCTCGCATGCTGAAGCTGGCGCAGCGGATGACGGACAACTTCTGCGCGGGGGTGTGCGCGTCGGCGGCGCAGAAGTGGCGGCGCCTGGACGAGTGGCGCGGCGAGGGTGGGGGCGGCGGCGGTGGCGGCGGCGGGGACGGGGAGGACAAGGTGCGGATGATGGCGCGGCACAGCGTGGGCGCGCCGGGGGAGCCGCCGGGCGTCGTGCTGAGCGCCACCACGTCGGTGCGGCTCCCCGGCACGCTGCCGCAGCGCGTGTTCGACTACCTCCGCGACGAGCAGCGGCGCGGCGACTGGGACATCCTTGCCAACGGCGAGGCCATGCAGGAGATGGACCACATCGCCAAGGGCCAGCACCACGGCAATGCCGTCTCCCTCCTCCGTCCAAATGCCACAAGCGGGAACCAGAACAACATGCTGATCCTCCAGGAGACGTGCACCGACTCATCGGGCTCCCTCGTCGTCTACGCTCCGGTGGACGTGCAGTCGATGCACGTCGTCATGAACGGCGGCGACTCCGCCTACGTCTCCCTCCTCCCCTCCGGCTTCGCCATCCTCCCCGACGGCCACAACAATGGCGCCTCGCCGTCTCCGGCAGAGGTCGGCAGCGGCGCCTCGCCGAACTCCGCCGCCGGTGGCGGTGGCGGTAGCAACAACACCGGGTCGCTGGTGACGGTGGCGTTCCAGATACTCGTCAACAACCTGCCGACGGCGAAGCTCACCGTGGAGTCCGTCGACACCGTCAGCAACCTCCTCTCCTGCACCATCCAGAAGATCAAGTCGGCACTGCAGGCCAGCATCATCTCACCATAGATAAGTGGACATTTGACGTGGATTCCGACTCGACCATTTTTGAGTCGAGTCGGATGCCATCTCAAATGTCTAACTTTTGAAGGTTAGAAGACTGAGAGGACTTCCGCGGCGGGCGATGGCCGACCGAAACTGGCTGATGGATGCAACTCAATCGTTGATCAGGTAGAGTTTTCGAGAGGCGATATGCGAGCGAGGATAAAAATAAAATTAAGTTATATATAGTGTGTGGAGTATATTTGCATAGATGAGCAAATTAAATGGGGTGAGTTGCAGAGGGATCAAGTCAAGAACGAACCTTGCGCTAGGCTTGGCTCAAGCTGATGTGGTGGTTCGGGTATTGACTTAGTCTCTGGTGAAAATAAACCCCTAGGGCTTTGATCTCCTATATATATCTAGCAGTTTGCTTAATTTAACCATTTTGTGAAGTTTTTTTTAATTCTCCAAAATGGGGGAAATATAGAGAAACAATACTGATCAGATCCCCAAGATCGTTGGTGTTTGTTTAGTTTGCATAATGTTGGAATGAGTTGATATATAAACATGT]

[+] EMBL AK071877             [TGTCGTTTGTAGTGAGCTCGCGTGATGAGCTTCGGTGGCATGTTCGATGGCGCCGGCTCCGGCGTCTTCTCCTACGACGCCGGCGGCGGCGGCGGCGGCGGCGGAGTACACAACTCCCGCCTCCTCCCTACGCCGCCCGTCCCCAAGCCCGGCGGCGGGTTCGCCGCTCCCGGCCTCTCTCTCGGCCTGCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATGATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTCCAGCGACAGTGCCAGTATCTCGCATGCTGAAGCTGGCGCAGCGGATGACGGACAACTTCTGCGCGGGGGTGTGCGCGTCGGCGGCGCAGAAGTGGCGGCGCCTGGACGAGTGGCGCGGCGAGGGTGGGGGCGGCGGCGGTGGCGGCGGCGGGGACGGGGAGGACAAGGTGCGGATGATGGCGCGGCACAGCGTGGGCGCGCCGGGGGAGCCGCCGGGCGTCGTGCTGAGCGCCACCACGTCGGTGCGGCTCCCCGGCACGCTGCCGCAGCGCGTGTTCGACTACCTCCGCGACGAGCAGCGGCGCGGCGACTGGGACATCCTTGCCAACGGCGAGGCCATGCAGGAGATGGACCACATCGCCAAGGGCCAGCACCACGGCAATGCCGTCTCCCTCCTCCGTCCAAATGCCACAAGCGGGAACCAGAACAACATGCTGATCCTCCAGGAGACGTGCACCGACTCATCGGGCTCCCTCGTCGTCTACGCTCCGGTGGACGTGCAGTCGATGCACGTCGTCATGAACGGCGGCGACTCCGCCTACGTCTCCCTCCTCCCCTCCGGCTTCGCCATCCTCCCCGACGGCCACAACAATGGCGCCTCGCCGTCTCCGGCAGAGGTCGGCAGCGGCGCCTCGCCGAACTCCGCCGCCGGTGGCGGTGGCGGTAGCAACAACACCGGGTCGCTGGTGACGGTGGCGTTCCAGATACTCGTCAACAACCTGCCGACGGCGAAGCTCACCGTGGAGTCCGTCGACACCGTCAGCAACCTCCTCTCCTGCACCATCCAGAAGATCAAGTCGGCACTGCAGGCCAGCATCATCTCACCATAGATAAGTGGACATTTGACGTGGATTCCGACTCGACCATTTTTGAGTCGAGTCGGATGCCATCTCAAATGTCTAACTTTTGAAGGTTAGAAGACTGAGAGGACTTCCGCGGCGGGCGATGGCCGACCGAAACTGGCTGATGGATGCAACTCAATCGTTGATCAGGTAGAGTTTTCGAGAGGCGATATGCGAGCGAGGATAAAAATAAAATTAAGTTATATATAGTGTGTGGAGTATATTTGCATAGATGAGCAAATTAAATGGGGTGAGTTGCAGAGGGATCAAGTCAAGAACGAACCTTGCGCTAGGCTTGGCTCAAGCTGATGTGGTGGTTCGGGTATTGACTTAGTCTCTGGTGAAAATAAACCCCTAGGGCTTTGATCTCCTATATATATCTAGCAGTTTGCTTAATTTAACCATTTTGTGAAGTTTTTTTTAATTCTCCAAAATGGGGGAAATATAGAGAAACAATACTGATCAGATCCCCAAGATCGTTGGTGTTTGTTTAGTTTGCATAATGTTGGAATGAGTTGATATATAAACATGT]
[+] EMBL D42215               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccAAACTGGCTGATGGATGCAACTCAATCGTTGATCAGGTAGAGTTTTCGAGAGGCGATATGCGAGCGAGGATAAAAATAAAATTAAGTTATATATAGTGTGTGGAGTATATTTGCATAGATGAGCAAATTAAATGGGGTGAGTTGCAGAGGGATC AGTCAgac                                                                                                                                                                                                                                                               ]


>consensus_3573#0 TGTCGTTTGTAGTGAGCTCGCGTGATGAGCTTCGGTGGCATGTTCGATGGCGCCGGCTCC GGCGTCTTCTCCTACGACGCCGGCGGCGGCGGCGGCGGCGGCGGAGTACACAACTCCCGC CTCCTCCCTACGCCGCCCGTCCCCAAGCCCGGCGGCGGGTTCGCCGCTCCCGGCCTCTCT CTCGGCCTGCAAACTATGGACGGTAGCCAGCTCGGCGACGTGAACCGGTCGCTTGCCATG ATGGGCAACGGCGGGAGCGGCAGCGGCGGCGACGGCGACTCGCTCCAGCGACAGTGCCAG TATCTCGCATGCTGAAGCTGGCGCAGCGGATGACGGACAACTTCTGCGCGGGGGTGTGCG CGTCGGCGGCGCAGAAGTGGCGGCGCCTGGACGAGTGGCGCGGCGAGGGTGGGGGCGGCG GCGGTGGCGGCGGCGGGGACGGGGAGGACAAGGTGCGGATGATGGCGCGGCACAGCGTGG GCGCGCCGGGGGAGCCGCCGGGCGTCGTGCTGAGCGCCACCACGTCGGTGCGGCTCCCCG GCACGCTGCCGCAGCGCGTGTTCGACTACCTCCGCGACGAGCAGCGGCGCGGCGACTGGG ACATCCTTGCCAACGGCGAGGCCATGCAGGAGATGGACCACATCGCCAAGGGCCAGCACC ACGGCAATGCCGTCTCCCTCCTCCGTCCAAATGCCACAAGCGGGAACCAGAACAACATGC TGATCCTCCAGGAGACGTGCACCGACTCATCGGGCTCCCTCGTCGTCTACGCTCCGGTGG ACGTGCAGTCGATGCACGTCGTCATGAACGGCGGCGACTCCGCCTACGTCTCCCTCCTCC CCTCCGGCTTCGCCATCCTCCCCGACGGCCACAACAATGGCGCCTCGCCGTCTCCGGCAG AGGTCGGCAGCGGCGCCTCGCCGAACTCCGCCGCCGGTGGCGGTGGCGGTAGCAACAACA CCGGGTCGCTGGTGACGGTGGCGTTCCAGATACTCGTCAACAACCTGCCGACGGCGAAGC TCACCGTGGAGTCCGTCGACACCGTCAGCAACCTCCTCTCCTGCACCATCCAGAAGATCA AGTCGGCACTGCAGGCCAGCATCATCTCACCATAGATAAGTGGACATTTGACGTGGATTC CGACTCGACCATTTTTGAGTCGAGTCGGATGCCATCTCAAATGTCTAACTTTTGAAGGTT AGAAGACTGAGAGGACTTCCGCGGCGGGCGATGGCCGACCGAAACTGGCTGATGGATGCA ACTCAATCGTTGATCAGGTAGAGTTTTCGAGAGGCGATATGCGAGCGAGGATAAAAATAA AATTAAGTTATATATAGTGTGTGGAGTATATTTGCATAGATGAGCAAATTAAATGGGGTG AGTTGCAGAGGGATCAAGTCAAGAACGAACCTTGCGCTAGGCTTGGCTCAAGCTGATGTG GTGGTTCGGGTATTGACTTAGTCTCTGGTGAAAATAAACCCCTAGGGCTTTGATCTCCTA TATATATCTAGCAGTTTGCTTAATTTAACCATTTTGTGAAGTTTTTTTTAATTCTCCAAA ATGGGGGAAATATAGAGAAACAATACTGATCAGATCCCCAAGATCGTTGGTGTTTGTTTA GTTTGCATAATGTTGGAATGAGTTGATATATAAACATGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)