These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTGGTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATATTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATGGGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGAAGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTTGAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT] [+] EMBL AU174908 [GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTGGTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATATTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATGGGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGAAGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTTGAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT] consensusID : consensus_3576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TATAGTCGCTGGTATCTCACCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCAACTTCAGGAGAAATTTGACCATTTAGTTGGTTACCGGGCATGTGAATTCTTGAGACGAAACTAAGGCCAGCTACACAAGGAAATATTTGGCCTGTGATGTTCTGTGACTCAAGATCTAATGCCACAACCCGAGATGGGTTGCTGTTGCTACAAGTAACTCCTTTCCAATTGCATACTGCAAGAGATTCATTTCCCCATGAGGCTAGTGCTTCAGAGGGGTCATGGAGCTGGGACTTGAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG] [+] EMBL AU174907 [TATAGTCGCTGGTATCTCACCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCAACTTCAGGAGAAATTTGACCATTTAGTTGGTTACCGGGCATGTGAATTCTTGAGACGAAACTAAGGCCAGCTACACAAGGAAATATTTGGCCTGTGATGTTCTGTGACTCAAGATCTAATGCCACAACCCGAGATGGGTTGCTGTTGCTACAAGTAACTCCTTTCCAATTGCATACTGCAAGAGATTCATTTCCCCATGAGGCTAGTGCTTCAGAGGGGTCATGGAGCTGGGACTTGAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3576#0 GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGAT 60 consensus_3576#1 ---------------TATAGTCGCTGGTATCTCACC-AGTAAGAGAATTCAAGCTGAGAT 44 ********************* *********************** consensus_3576#0 TGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTG 120 consensus_3576#1 TGAGATATCTAAGGCGGGTTAACTGCCC-AACTTCAGGAGAAATTTGACC-ATTTAGTTG 102 **************************** ********************* ********* consensus_3576#0 GTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATA 180 consensus_3576#1 GTTACCGGGCATGTGAATTC-TTGAGACGAAACTAAGGCC-AGCTAC-ACAAGGAAA-TA 158 ******************* ******************* ****** ********* ** consensus_3576#0 TTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATG 240 consensus_3576#1 TTTGGCC-TGTGATGTT-CTGTGACTCAAGATCT---AATGCCA--CAACCC--GAGATG 209 ******* ********* *********** * * **** ****** ***** consensus_3576#0 GGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGA 300 consensus_3576#1 GG-TTGCTG-TTGCTAC--AAGTAACTCCTTT---CCAA--TTGCA--TACTGCAAGAGA 258 ** ****** ******* ********** ** **** **** ****** * *** consensus_3576#0 AGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTT 360 consensus_3576#1 ----TTCATTT--CCCCATGAGGCTA-GTGCTTC--AGAGGGGTCATGGAGCTGGGACTT 309 * ***** ************* ****** ************ *********** consensus_3576#0 GAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT-------- 395 consensus_3576#1 GAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG 352 ********* ************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||