These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACTGGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATCCTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG] [+] EMBL D42339 [GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACTGGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATCCTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG] consensusID : consensus_3579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 84 fasta sequence [CATGTGGTTGGCTGGGGTGGCTGGCTGGGGTGGCAAGGCCAGGGACCAGGCAAGGGTCCCCCTATATATGTTTGAACTGAAAAT] [+] EMBL D42254 [CATGTGGTTGGCTGGGGTGGCTGGCTGGGGTGGCAAGGCCAGGGACCAGGCAAGGGTCCCCCTATATATGTTTGAACTGAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3579#0 GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACT 60 consensus_3579#1 -------------------------------CATGTGGT-TGGC-TGGG-GTGGCTGGCT 26 ******* **** **** ** **** ** consensus_3579#0 GGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATC 120 consensus_3579#1 GGG-GTGGCAAGGCCAGGGACCAGGCAAGGG-TCCCCCTATATATGTTTGAACTGAAAAT 84 *** ************ ************** ************************** consensus_3579#0 CTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG 180 consensus_3579#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||