Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3581 cluster # 3581       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3581#0 length = 1516 sequences # 2  

consensusID : consensus_3581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1516
fasta sequence
                              [TCCATCACAATCCCACCAAATCCTTGTCCTCACGTCAACGATCGCAAGCCATAGCTCCGATGGATCCATCGTACCCTCCCTCCGCCACCGCCCGCCGCGCCGCCGCCATCGCCCGCCACCTCGCCGGCCTCTCCCCTCGCGACGCCGCCGCCGTTGCTGCAGCGCTGGAGCCCTCCGCGTGCCTGAGCTACGCGCCCCCGGAGTCGTCGGAGCCCGCCCCTGCGTTCTCGCCGCTGGAGCTCCGCTCGCTCCTCGACGGGCACCACCTCCGGGAGCGCGACTGGGCGTTCCGCGCGATGGAGGAGAGCCCGCTCTTCTGCCAGCGCCGCAGCGGCGGAAAGGTGTTCGTGTCTCCGGACTACAACGAGGGCAAGGAGGGGCAGCGGGAGGCCACGATGCGGCGGGTCGGCTACCTGGCGCGGCGGGGCGTGTTCCGGGGCTGGCTCACGGAGCCGGGGCCCGACGCCGAGCTCCGCAAGCTCGCGCTGCTCGAGTGCCTCGGCATGTATGACCACTCCCTCGCCATCAAGATCGGCGTCCACTTCTTCCTCTGGGGCAGCGCAATCAAGTTTCTTGGAACAAAGCGCCACCATGACAAATGGTTGTCGGACACAGAAAATTATGTTATCAAGGGTTGTTTTTCCATGACAGAACTGGGTCATGGGAGCAATGTCCGAGGAATTGAGACAGTGGCTACTTATGATATTAAAACAAGAGAGTTTGTGATAAATACTCCTTGTGAATCAGCCCAGAAGTACTGGATTGGTGGAGCTGCTAATCATGCTACACATACTATAGTCTTTGCGCAGCTCCATATAAATGGGAGAAATGAAGGAGTCCATGCTTTTGTAGCTCAGATTAGGGATGAACATGAAAATGTTATGCCTAATATCCAGATAGCTGACTGTGGCCATAAAATTGGATTAAATGGTGTTGATAATGGACGAATTTGGTTTAACAATATACGTGTTCCTCGAGAGAATTTGCTGAATCTTGTTGCTGATGTTTTGCCGGATGGGCAATATGTTAGCACGATAGATGACCCTGATCAGAGGTTTGCAGCATTTTTATCTCCACTTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAGGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAGTTACACCGGATGGTCCTGAAATGCTGTTACTTGATTATCCCAGTCACCAGCGACGCCTTCTACCACTGCTAGCAAAAGCATGTCTGATGAGCAGTGCTGGTAATTTTATGAAAAGGATGTATGTGAAGAGGACTCCTGAACTTAACAAATCTATACACATTTACTCTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGGAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATAGGAATTTTCAAAGCTGAATTTGATGTCCAGTCTACATTTGAGGGCGACAATAATGTTCTAATGCAGCAGGT]

[+] EMBL AK066934             [TCCATCACAATCCCACCAAATCCTTGTCCTCACGTCAACGATCGCAAGCCATAGCTCCGATGGATCCATCGTACCCTCCCTCCGCCACCGCCCGCCGCGCCGCCGCCATCGCCCGCCACCTCGCCGGCCTCTCCCCTCGCGACGCCGCCGCCGTTGCTGCAGCGCTGGAGCCCTCCGCGTGCCTGAGCTACGCGCCCCCGGAGTCGTCGGAGCCCGCCCCTGCGTTCTCGCCGCTGGAGCTCCGCTCGCTCCTCGACGGGCACCACCTCCGGGAGCGCGACTGGGCGTTCCGCGCGATGGAGGAGAGCCCGCTCTTCTGCCAGCGCCGCAGCGGCGGAAAGGTGTTCGTGTCTCCGGACTACAACGAGGGCAAGGAGGGGCAGCGGGAGGCCACGATGCGGCGGGTCGGCTACCTGGCGCGGCGGGGCGTGTTCCGGGGCTGGCTCACGGAGCCGGGGCCCGACGCCGAGCTCCGCAAGCTCGCGCTGCTCGAGTGCCTCGGCATGTATGACCACTCCCTCGCCATCAAGATCGGCGTCCACTTCTTCCTCTGGGGCAGCGCAATCAAGTTTCTTGGAACAAAGCGCCACCATGACAAATGGTTGTCGGACACAGAAAATTATGTTATCAAGGGTTGTTTTTCCATGACAGAACTGGGTCATGGGAGCAATGTCCGAGGAATTGAGACAGTGGCTACTTATGATATTAAAACAAGAGAGTTTGTGATAAATACTCCTTGTGAATCAGCCCAGAAGTACTGGATTGGTGGAGCTGCTAATCATGCTACACATACTATAGTCTTTGCGCAGCTCCATATAAATGGGAGAAATGAAGGAGTCCATGCTTTTGTAGCTCAGATTAGGGATGAACATGAAAATGTTATGCCTAATATCCAGATAGCTGACTGTGGCCATAAAATTGGATTAAATGGTGTTGATAATGGACGAATTTGGTTTAACAATATACGTGTTCCTCGAGAGAATTTGCTGAATCTTGTTGCTGATGTTTTGCCGGATGGGCAATATGTTAGCACGATAGATGACCCTGATCAGAGGTTTGCAGCATTTTTATCTCCACTTACACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAGGTTGGCGTTGCAATTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAGTTACACCGGATGGTCCTGAAATGCTGTTACTTGATTATCCCAGTCACCAGCGACGCCTTCTACCACTGCTAGCAAAAGCATGTCTGATGAGCAGTGCTGGTAATTTTATGAAAAGGATGTATGTGAAGAGGACTCCTGAACTTAACAAATCTATACACATTTACTCTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGGAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATAGGAATTTTCAAAGCTGAATTTGATGTCCAGTCTACATTTGAGGGCGACAATAATGTTCTAATGCAGCAGGT]
[+] EMBL CB621964             [              ACCAAATCCTTGTCCTCACGTCAACGATCGCAAGCCATAGCTCCGATGGATCCATCGTACCCTCCCTCCGCCACCGCCCGCCGCGCCGCCGCCATCGCCCGCCACCTCGCCGGCCTCTCCCCTCGCGACGCCGCCGCCGTTGCTGCAGCGCTGGAGCCCTCCGCGTGCCTGAGCTACGCGCCCCCGGAGTCGTCGGAGCCCGCCCCTGCGTTCTCGCCGCTGGAGCTCCGCTCGCTCCTCGACCGGCACCACCTCCGGGAGCGCGACTGGGCGTTCCGCGCGATGGAGGAGAGCCCGCTCTTCTGCCAGCGCCGCAGCGGCGGAAAGGTGTTCGTGTCTCCGGACTACAACGAGGGCAAGGAGGGGCAGCGGGAGGCCACGATGCGGCGGGTCGGCTACCTGGCGCGGCGGGGCGTGTTCCGGGGCTGGCTCACGGAGCCGGGGCCCGACGCCGAGCTCCGCAAGCTCGCGCTGCTTGAGTGCCTCGGCATGTATGACCACTCCCTCGCCATCAAGATCGGCGTCCACTTCTTCCTCTGGGGCAGCGCAATCAAGTTTCTTGGAACAAAGCGCCACCATGACAAATGGTTGTCGGACACAGAAAATTATGTTATCAAGGGTTGTTTTTCCATGACAGAACTGGGTCATGGGAGCAATGTCCGAGGAATTGAGACAGTGGCTACTTATGATATTAAAACAAGAGAGTTTGTGATAAATACTCCTTGTGAATCAGCCCAAAAGTACTGGATTGGTGGAGCTGCTAATCATGCTACACATACTATAGTCTTTGCGCAGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_3581#0 TCCATCACAATCCCACCAAATCCTTGTCCTCACGTCAACGATCGCAAGCCATAGCTCCGA TGGATCCATCGTACCCTCCCTCCGCCACCGCCCGCCGCGCCGCCGCCATCGCCCGCCACC TCGCCGGCCTCTCCCCTCGCGACGCCGCCGCCGTTGCTGCAGCGCTGGAGCCCTCCGCGT GCCTGAGCTACGCGCCCCCGGAGTCGTCGGAGCCCGCCCCTGCGTTCTCGCCGCTGGAGC TCCGCTCGCTCCTCGACGGGCACCACCTCCGGGAGCGCGACTGGGCGTTCCGCGCGATGG AGGAGAGCCCGCTCTTCTGCCAGCGCCGCAGCGGCGGAAAGGTGTTCGTGTCTCCGGACT ACAACGAGGGCAAGGAGGGGCAGCGGGAGGCCACGATGCGGCGGGTCGGCTACCTGGCGC GGCGGGGCGTGTTCCGGGGCTGGCTCACGGAGCCGGGGCCCGACGCCGAGCTCCGCAAGC TCGCGCTGCTCGAGTGCCTCGGCATGTATGACCACTCCCTCGCCATCAAGATCGGCGTCC ACTTCTTCCTCTGGGGCAGCGCAATCAAGTTTCTTGGAACAAAGCGCCACCATGACAAAT GGTTGTCGGACACAGAAAATTATGTTATCAAGGGTTGTTTTTCCATGACAGAACTGGGTC ATGGGAGCAATGTCCGAGGAATTGAGACAGTGGCTACTTATGATATTAAAACAAGAGAGT TTGTGATAAATACTCCTTGTGAATCAGCCCAGAAGTACTGGATTGGTGGAGCTGCTAATC ATGCTACACATACTATAGTCTTTGCGCAGCTCCATATAAATGGGAGAAATGAAGGAGTCC ATGCTTTTGTAGCTCAGATTAGGGATGAACATGAAAATGTTATGCCTAATATCCAGATAG CTGACTGTGGCCATAAAATTGGATTAAATGGTGTTGATAATGGACGAATTTGGTTTAACA ATATACGTGTTCCTCGAGAGAATTTGCTGAATCTTGTTGCTGATGTTTTGCCGGATGGGC AATATGTTAGCACGATAGATGACCCTGATCAGAGGTTTGCAGCATTTTTATCTCCACTTA CACTTGGTCGAGTTAATATTGCAGTTAATGCGGTTTATATTTCAAAGGTTGGCGTTGCAA TTGCTGTGAGATATGCTTTGTCAAGGAGAGCCTTTTCAGTTACACCGGATGGTCCTGAAA TGCTGTTACTTGATTATCCCAGTCACCAGCGACGCCTTCTACCACTGCTAGCAAAAGCAT GTCTGATGAGCAGTGCTGGTAATTTTATGAAAAGGATGTATGTGAAGAGGACTCCTGAAC TTAACAAATCTATACACATTTACTCTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATA TGACCACACTTCAGGAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATC GCATAGGAATTTTCAAAGCTGAATTTGATGTCCAGTCTACATTTGAGGGCGACAATAATG TTCTAATGCAGCAGGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)