These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGTCTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATCTCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATCGTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACCTTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA] [+] EMBL AU092498 [ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGTCTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATCTCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATCGTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACCTTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA] consensusID : consensus_3590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AATGAGCACGGAGGCGAGAAACCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCT] [-] EMBL AU176400 [AATGAGCACGGAGGCGAGAAACCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3590#0 ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGT 60 consensus_3590#1 ------------------------------------------------------------ consensus_3590#0 CTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATC 120 consensus_3590#1 ------------------------------------------------------------ consensus_3590#0 TCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATC 180 consensus_3590#1 ------------------------------------------------------------ consensus_3590#0 GTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACC 240 consensus_3590#1 ------------------------------------------AATGAGCACGGAGGCGAG 18 * * **** * * consensus_3590#0 TTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGT 300 consensus_3590#1 AAA-CCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGT 77 ******************************************************** consensus_3590#0 CGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCT 360 consensus_3590#1 CGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCT 137 ************************************************************ consensus_3590#0 TCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGA 420 consensus_3590#1 TCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGA 197 ************************************************************ consensus_3590#0 GGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGA 480 consensus_3590#1 GGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGA 257 ************************************************************ consensus_3590#0 CCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA 516 consensus_3590#1 CCATGACGCACCACTTCCAGATCT------------ 281 ************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||