|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1250 fasta sequence
[TGTGTTCATGAGTGTGAGAGTGTTCCTAGGCTAAGCCAACATTTGGTATCAGAGCCTGGAGATGAAGATCGGAGATGGCTCGACCTCCGATGCCTCCGTGGAGCGCGTCGTGCCCAATTCCAGCGTCATGGAGCTGCTGCTGCTAACCAGGGCCAACTACCATCAGTGGGCCTTGGTTATGCGGGTGAGCTTGGAGGCGCTGGAGTTGTGGGACGCGGTGGAAGCGGTCACCAAGGATAGGCGGGCGTTGGCCACCATCTTGCACGCGGTACCACCGAAGATGAAGGTCGGGCTCGCCGTGAAGACGTCGGCGAAGGAAGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCGCGTGAAGTCAGCGAGTGTGCAACGCTTCATGAAGGAGTTTGAGAACATGATGTTCCGCGACGGGGAGACCGTCGGCGACTTTGCGATGCGCATCAACGGGCCCACCGCGAGCCTGCGTGACCTTGGGGAGGAGATAGAAGACAGCCACGTGGTGAAGAAGGTCCTGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCACGGTGGCAATTGAGATGCTCGAGGACATGGATGATATGTCCGTTGAGGAGCTCGTCGGGCGGCTGCAAGTGGCGGTGGACGCCGACGTTGAAGATCAAACGGAGGTCCATGGCGGGCAGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACGCGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGCCATGACAATGGCAAGAAAGGCGACGACCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGGGCTGGATCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTCGATTGCCTGGCTTGTCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCCGGATACCAACTTTTGTTTTTGTGACTTTTTATTAAAATAATAATATTTCTAAGAAAATGCCAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGACATCTGATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAAATAAGATGTCCCTCCTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTCCAGTGTAGTGCCTCTTTAAAACCCACCTATCAGGCCTCTTGAAGCCTATC]
[+] EMBL AK100859 [TGTGTTCATGAGTGTGAGAGTGTTCCTAGGCTAAGCCAACATTTGGTATCAGAGCCTGGAGATGAAGATCGGAGATGGCTCGACCTCCGATGCCTCCGTGGAGCGCGTCGTGCCCAATTCCAGCGTCATGGAGCTGCTGCTGCTAACCAGGGCCAACTACCATCAGTGGGCCTTGGTTATGCGGGTGAGCTTGGAGGCGCTGGAGTTGTGGGACGCGGTGGAAGCGGTCACCAAGGATAGGCGGGCGTTGGCCACCATCTTGCACGCGGTACCACCGAAGATGAAGGTCGGGCTCGCCGTGAAGACGTCGGCGAAGGAAGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCGCGTGAAGTCAGCGAGTGTGCAACGCTTCATGAAGGAGTTTGAGAACATGATGTTCCGCGACGGGGAGACCGTCGGCGACTTTGCGATGCGCATCAACGGGCCCACCGCGAGCCTGCGTGACCTTGGGGAGGAGATAGAAGACAGCCACGTGGTGAAGAAGGTCCTGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCACGGTGGCAATTGAGATGCTCGAGGACATGGATGATATGTCCGTTGAGGAGCTCGTCGGGCGGCTGCAAGTGGCGGTGGACGCCGACGTTGAAGATCAAACGGAGGTCCATGGCGGGCAGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACGCGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGCCATGACAATGGCAAGAAAGGCGACGACCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGGGCTGGATCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTCGATTGCCTGGCTTGTCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCCGGATACCAACTTTTGTTTTTGTGACTTTTTATTAAAATAATAATATTTCTAAGAAAATGCCAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGACATCTGATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAAATAAGATGTCCCTCCTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTCCAGTGTAGTGCCTCTTTAAAACCCACCTATCAGGCCTCTTGAAGCCTATC]
consensusID : consensus_3609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[AGGCGGCTCTCCAACGACCGCGCCAAGGATCGGCGGGCGTTGGCCGCCATCTTGCGTGCAGTGCCATCGGAGATGAAGGCCGGGCTTGCCGTGAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGTGAGCCGGCGACGATCGCGTGAAATAGGCGAGCGTGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGACGGGGAGACCGTTGGTGACTTTGTGATGCGCATCAACGGGCTCACCGCAAGCCTGCGCGACCTCGGGGAGGAGATGGAAGACAGTCGCGTGGTGAAGAAGGTCGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCGCGGTTGCGATTGAGATGCTCGCGGACATGGATGTTATGTCCGTCGAGGAGCTCGTCGGACGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGTGGAGGCCCATGGCGAGCAGCTACTTCTCACCGAGGAGCAGTGGGAGGCACGTCGGCGCCAGCGTCGCGAAAAGGAGCGTGTGCGTGAGGGCGGCGCCAAGGACGACGGCCGAAACAGCGACAATGACGACGGCGGCAGCAGTGTGAGCTCCGAGGTAAACCGGCGTCCGCGCCGTCCAGGAGGGAAGTGCTACAATTGTGGTGTTCGTGGCCATCTCTCCCGGGATTGCCGCAAGCCAAGGAAGGAGGAGGCGCTCCTCGCCTCTGCCGACGACGAGCCGACGCTCCTGTAGGTCAGGTTTAGGGGGGTGATTGTTAGGAA]
[+] EMBL CB626539 [AGGCGGCTCTCCAACGACCGCGCCAAGGATCGGCGGGCGTTGGCCGCCATCTTGCGTGCAGTGCCATCGGAGATGAAGGCCGGGCTTGCCGTGAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGTGAGCCGGCGACGATCGCGTGAAATAGGCGAGCGTGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGACGGGGAGACCGTTGGTGACTTTGTGATGCGCATCAACGGGCTCACCGCAAGCCTGCGCGACCTCGGGGAGGAGATGGAAGACAGTCGCGTGGTGAAGAAGGTCGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCGCGGTTGCGATTGAGATGCTCGCGGACATGGATGTTATGTCCGTCGAGGAGCTCGTCGGACGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGTGGAGGCCCATGGCGAGCAGCTACTTCTCACCGAGGAGCAGTGGGAGGCACGTCGGCGCCAGCGTCGCGAAAAGGAGCGTGTGCGTGAGGGCGGCGCCAAGGACGACGGCCGAAACAGCGACAATGACGACGGCGGCAGCAGTGTGAGCTCCGAGGTAAACCGGCGTCCGCGCCGTCCAGGAGGGAAGTGCTACAATTGTGGTGTTCGTGGCCATCTCTCCCGGGATTGCCGCAAGCCAAGGAAGGAGGAGGCGCTCCTCGCCTCTGCCGACGACGAGCCGACGCTCCTGTAGGTCAGGTTTAGGGGGGTGATTGTTAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3609#0 TGTGTTCATGAGTGTGAGAGTGTTCCTAGGCTAAGCCAACATTTGGTATCAGAGCCTGGA 60
consensus_3609#1 ------------------------------------------------------------
consensus_3609#0 GATGAAGATCGGAGATGGCTCGACCTCCGATGCCTCCGTGGAGCGCGTCGTGCCCAATTC 120
consensus_3609#1 ------------------------------------------------------------
consensus_3609#0 CAGCGTCATGGAGCTGCTGCTGCTAACCAGGGCCAACTACCATCAGTGGGCCTTGGTTAT 180
consensus_3609#1 ------------------------------------------------------------
consensus_3609#0 GCGGGTGAGCTTGGAGGCGCTGGAGTTGTGGGACGCGGTGGAAGCGGTCACCAAGGATAG 240
consensus_3609#1 ---------------------------AGGCGGCTCTCCAACGACCG-CGCCAAGGATCG 32
* * * * * * * ******** *
consensus_3609#0 GCGGGCGTTGGCCACCATCTTGCACGCGGTACCACCGAAGATGAAGGTCGGGCTCGCCGT 300
consensus_3609#1 GCGGGCGTTGGCCGCCATCTTGCGTGCAGTGCCATCGGAGATGAAGGCCGGGCTTGCCGT 92
************* ********* ** ** *** ** ********* ****** *****
consensus_3609#0 GAAGACGTCGGCGAAGGAAGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCG 360
consensus_3609#1 GAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGTGAGCCGGCGACGATCG 152
****************** ************************ ************* **
consensus_3609#0 CGTGAAGTCAGCGAGTGTGCAACGCTTCATGAAGGAGTTTGAGAACATGATGTTCCGCGA 420
consensus_3609#1 CGTGAAATAGGCGAGCGTGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGA 212
****** * ***** ********* *********************** *********
consensus_3609#0 CGGGGAGACCGTCGGCGACTTTGCGATGCGCATCAACGGGCCCACCGCGAGCCTGCGTGA 480
consensus_3609#1 CGGGGAGACCGTTGGTGACTTTGTGATGCGCATCAACGGGCTCACCGCAAGCCTGCGCGA 272
************ ** ******* ***************** ****** ******** **
consensus_3609#0 CCTTGGGGAGGAGATAGAAGACAGCCACGTGGTGAAGAAGGTCCTGCGCGTGGTCCCGAA 540
consensus_3609#1 CCTCGGGGAGGAGATGGAAGACAGTCGCGTGGTGAAGAAGGTC--GCGCGTGGTCCCGAA 330
*** *********** ******** * **************** ***************
consensus_3609#0 GAGGTTGAAGCAAGTCACGGTGGCAATTGAGATGCTCGAGGACATGGATGATATGTCCGT 600
consensus_3609#1 GAGGTTGAAGCAAGTCGCGGTTGCGATTGAGATGCTCGCGGACATGGATGTTATGTCCGT 390
**************** **** ** ************* *********** *********
consensus_3609#0 TGAGGAGCTCGTCGGGCGGCTGCAAGTGGCGGTGGACGCCGACGTTGAAGATCAAACGGA 660
consensus_3609#1 CGAGGAGCTCGTCGGACGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGTGGA 450
************** ** ************* *********** ********* ***
consensus_3609#0 GGTCCATGGCGGGCAGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACG 720
consensus_3609#1 GGCCCATGGCGAGCAGCTACTTCTCACCGAGGAGCAGTGGGAGGCACGTCGGCGCCAGCG 510
** ******** ************* * ***************** * **** ** **
consensus_3609#0 CGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGCCATGACAATGGCAAGAAAGGCGACGA 780
consensus_3609#1 TCGCGAAAAGGAGCGT------------GTGCG---TGAGGGCGGCGCCAAGGACGACGG 555
** *** *** ***** *** *** ** * *****
consensus_3609#0 CCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGGGCTGGA 840
consensus_3609#1 CC------GAAACAGCGACAATGACGA---CGGCGGCAGCAGTGTGAGCTCCGAGGTAAA 606
** ** ** **** ******* ** ********* ****** * * * *
consensus_3609#0 TCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTC 900
consensus_3609#1 CCGGC--GTCCGCGCCGTCCAGGAGGGAAGTGCTACAATTGTGGTGTTCGTGGCCATCTC 664
** * * * ** ** * * ** ** ** * * * * * **
consensus_3609#0 GATTGCCTGGCTTGTCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCC 960
consensus_3609#1 ---TCCCGGGATTGCCG---CAAGCCAAGGAAGGAGGAGGCGCTCCTCGCCTCTG---CC 715
* ** ** *** * **** * * *** * * * ** * **
consensus_3609#0 GGATACCAACTTTTGTTTTTGTGACTTTTTATTAAAATAATAATATTTCTAAGAAAATGC 1020
consensus_3609#1 GACGACGAGCCGACGCTCCTGTAGGTCAGGTTTAGGGGGGTGA--TTGTTAGGAA----- 768
* ** * * * * *** * *** * * ** ** ***
consensus_3609#0 CAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGACATCTG 1080
consensus_3609#1 ------------------------------------------------------------
consensus_3609#0 ATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAA 1140
consensus_3609#1 ------------------------------------------------------------
consensus_3609#0 ATAAGATGTCCCTCCTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTC 1200
consensus_3609#1 ------------------------------------------------------------
consensus_3609#0 CAGTGTAGTGCCTCTTTAAAACCCACCTATCAGGCCTCTTGAAGCCTATC 1250
consensus_3609#1 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||