cluster # 3614

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3614 cluster # 3614 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3614#0 length = 422 sequences # 1

consensus_3614#1 length = 405 sequences # 1

consensusID : consensus_3614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TCCCTTAGGATGGTCATGTNCCTCACTGCTGGGGGTCCAAGCTAAGCGNCTTAAGTAATTAACCGTGTCAGACATTTGCATGGTCTGATCAAAAGCATCATCATCATCGAGCAGAGCTGACTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCAAGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATGTACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCTCTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGGACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGANCCTACCTGAAAAAAAAAAAAAA]

[+] EMBL AU070458             [TCCCTTAGGATGGTCATGTNCCTCACTGCTGGGGGTCCAAGCTAAGCGNCTTAAGTAATTAACCGTGTCAGACATTTGCATGGTCTGATCAAAAGCATCATCATCATCGAGCAGAGCTGACTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCAAGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATGTACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCTCTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGGACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGANCCTACCTGAAAAAAAAAAAAAA]




>consensus_3614#0
TCCCTTAGGATGGTCATGTNCCTCACTGCTGGGGGTCCAAGCTAAGCGNCTTAAGTAATT
AACCGTGTCAGACATTTGCATGGTCTGATCAAAAGCATCATCATCATCGAGCAGAGCTGA
CTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCA
AGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATG
TACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCT
CTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGG
ACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGANCCTACCTGAAAAAAAAAAAA
AA

consensusID : consensus_3614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GCAGAGCTGACTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCAAGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATGTACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCTCTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGGACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGATCCTACCTGAATGGACAGTGCTGAACAGATAGATAAGTAGTAGTACTTAGCATTTAGCATTGAACTAGTTCTTGTCAACGATAAGTAATCCAATCCAAGCGTGAGCTCACGCGTGC]

[+] EMBL AK063204             [GCAGAGCTGACTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCAAGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATGTACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCTCTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGGACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGATCCTACCTGAATGGACAGTGCTGAACAGATAGATAAGTAGTAGTACTTAGCATTTAGCATTGAACTAGTTCTTGTCAACGATAAGTAATCCAATCCAAGCGTGAGCTCACGCGTGC]




>consensus_3614#1
GCAGAGCTGACTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCT
CAAGAGATCAAGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTA
AGAACGCATGTACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCT
GTGAACTTCTCTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTG
CCTTGCTTGGACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGATCCTACCTGAA
TGGACAGTGCTGAACAGATAGATAAGTAGTAGTACTTAGCATTTAGCATTGAACTAGTTC
TTGTCAACGATAAGTAATCCAATCCAAGCGTGAGCTCACGCGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3614#0      TCCCTTAGGATGGTCATGTNCCTCACTGCTGGGGGTCCAAGCTAAGCGNCTTAAGTAATT 60
consensus_3614#1      ------------------------------------------------------------
                                                                                  

consensus_3614#0      AACCGTGTCAGACATTTGCATGGTCTGATCAAAAGCATCATCATCATCGAGCAGAGCTGA 120
consensus_3614#1      --------------------------------------------------GCAGAGCTGA 10
                                                                        **********

consensus_3614#0      CTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCA 180
consensus_3614#1      CTCGATCCGGTTCGAGTTCTTGGCCATAACATGCGTGCTCGTGGAAAGCTCAAGAGATCA 70
                      ************************************************************

consensus_3614#0      AGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATG 240
consensus_3614#1      AGCTTCAGAGATCGATGGAACATGGCAGAAAAATCTATGTACATTAGCTAAGAACGCATG 130
                      ************************************************************

consensus_3614#0      TACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCT 300
consensus_3614#1      TACATATATGTATAGCTAGTTTCAACTTCCAAGTGCATTCTGAGAGGGCTGTGAACTTCT 190
                      ************************************************************

consensus_3614#0      CTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGG 360
consensus_3614#1      CTGGTTTGTGCTTCCTTTTGACTTGAACAAAAAGATCATGCAAGCAGTTGCCTTGCTTGG 250
                      ************************************************************

consensus_3614#0      ACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGANCCTACCTGAAAAAAAAAAAA 420
consensus_3614#1      ACTCTGAAGCTTTGCTTTGGCGTCTAAATTAAATCAAGATCCTACCTGAATGGACAGTGC 310
                      *************************************** **********   * *    

consensus_3614#0      AA---------------------------------------------------------- 422
consensus_3614#1      TGAACAGATAGATAAGTAGTAGTACTTAGCATTTAGCATTGAACTAGTTCTTGTCAACGA 370
                                                                                  

consensus_3614#0      -----------------------------------
consensus_3614#1      TAAGTAATCCAATCCAAGCGTGAGCTCACGCGTGC 405