cluster # 3617

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3617 cluster # 3617 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3617#0 length = 338 sequences # 1

consensus_3617#1 length = 216 sequences # 1

consensusID : consensus_3617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [CCGAACCCCCTCTCTCTGCTTCCTCTGCTCCTCGGAGAGCCGCAGCCAAGGACGCCAAGATAGGGACCGAAACCCCCGCCGCCGATGGCGACGCCGCCCGCAAGCGGCCCAGCGCCGGCGACGCGCCCGCCCCAGCCCCCNTCGCCGACAAGCGCCACCGCCCCAACCCCCCGTCCTCCGGCTCCCGCGACCGNGACCGCCACCACCGCCACGGCCACAGCCACAGCCACGGCCACGCCCGGCCGTCCACCGCGGGCGGCGGGGAGAAGAAGCTGCGGGCCTCGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTNGTGGCGCGACCCC]

[+] EMBL AU174489             [CCGAACCCCCTCTCTCTGCTTCCTCTGCTCCTCGGAGAGCCGCAGCCAAGGACGCCAAGATAGGGACCGAAACCCCCGCCGCCGATGGCGACGCCGCCCGCAAGCGGCCCAGCGCCGGCGACGCGCCCGCCCCAGCCCCCNTCGCCGACAAGCGCCACCGCCCCAACCCCCCGTCCTCCGGCTCCCGCGACCGNGACCGCCACCACCGCCACGGCCACAGCCACAGCCACGGCCACGCCCGGCCGTCCACCGCGGGCGGCGGGGAGAAGAAGCTGCGGGCCTCGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTNGTGGCGCGACCCC]




>consensus_3617#0
CCGAACCCCCTCTCTCTGCTTCCTCTGCTCCTCGGAGAGCCGCAGCCAAGGACGCCAAGA
TAGGGACCGAAACCCCCGCCGCCGATGGCGACGCCGCCCGCAAGCGGCCCAGCGCCGGCG
ACGCGCCCGCCCCAGCCCCCNTCGCCGACAAGCGCCACCGCCCCAACCCCCCGTCCTCCG
GCTCCCGCGACCGNGACCGCCACCACCGCCACGGCCACAGCCACAGCCACGGCCACGCCC
GGCCGTCCACCGCGGGCGGCGGGGAGAAGAAGCTGCGGGCCTCGCACATCCTGATCAAGC
ACGAGGGCTCCCGCCGCAAGGCCTNGTGGCGCGACCCC

consensusID : consensus_3617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [CCAAGGCTCTCTCCCACTCNACCGANCCCCCTCTCTCTGCTTCCTCTNCTCCTCGGAGAGCCGCAGCCANGGACGCCANGATAGGGACCGAAACCCCCGNCCCAGCCCCCCTNGNCGACAAGCGCCACCGCCCCGCAAGCGGCCCAGCGCCNGCNATCGCGCCGCCCGCCACCACCCGCGACGACGCCGCCGACCTCGCGCGGGCCCTNCTGATGA]

[+] EMBL AU070486             [CCAAGGCTCTCTCCCACTCNACCGANCCCCCTCTCTCTGCTTCCTCTNCTCCTCGGAGAGCCGCAGCCANGGACGCCANGATAGGGACCGAAACCCCCGNCCCAGCCCCCCTNGNCGACAAGCGCCACCGCCCCGCAAGCGGCCCAGCGCCNGCNATCGCGCCGCCCGCCACCACCCGCGACGACGCCGCCGACCTCGCGCGGGCCCTNCTGATGA]




>consensus_3617#1
CCAAGGCTCTCTCCCACTCNACCGANCCCCCTCTCTCTGCTTCCTCTNCTCCTCGGAGAG
CCGCAGCCANGGACGCCANGATAGGGACCGAAACCCCCGNCCCAGCCCCCCTNGNCGACA
AGCGCCACCGCCCCGCAAGCGGCCCAGCGCCNGCNATCGCGCCGCCCGCCACCACCCGCG
ACGACGCCGCCGACCTCGCGCGGGCCCTNCTGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3617#0      ---------------------CCGAACCCCCTCTCTCTGCTTCCTCTGCTCCTCGGAGAG 39
consensus_3617#1      CCAAGGCTCTCTCCCACTCNACCGANCCCCCTCTCTCTGCTTCCTCTNCTCCTCGGAGAG 60
                                           **** ********************* ************

consensus_3617#0      CCGCAGCCAAGGACGCCAAGATAGGGACCGAAACCCCCGCC---GCCGATGGCGACGCCG 96
consensus_3617#1      CCGCAGCCANGGACGCCANGATAGGGACCGAAACCCCCGNCCCAGCCCCCCTNGNCGACA 120
                      ********* ******** ******************** *   ***      * ** * 

consensus_3617#0      CCCGCAAGCGGCCCAGCGCCGGCGACGCGCCCGCCCCAGCCCCCNTCGCCGACAAGCGCC 156
consensus_3617#1      AGCGCCACCGCCCCGCAAGCGGCCCAGCGCCNGCNATCGCGCCGCCCGCCACCACCCGCG 180
                        *** * ** ***     ****   ***** **    ** **   ****  **  *** 

consensus_3617#0      ACCGCCCCAACCCCCCGTCCTCCGGCTCCCGCGACCGNGACCGCCACCACCGCCACGGCC 216
consensus_3617#1      ACGACGCCG--CCGACCTCGCGCGGGCCCTNCTGATGA---------------------- 216
                      **  * **   **  * **   ***  **  *    *                       

consensus_3617#0      ACAGCCACAGCCACGGCCACGCCCGGCCGTCCACCGCGGGCGGCGGGGAGAAGAAGCTGC 276
consensus_3617#1      ------------------------------------------------------------
                                                                                  

consensus_3617#0      GGGCCTCGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTNGTGGCGCGACC 336
consensus_3617#1      ------------------------------------------------------------
                                                                                  

consensus_3617#0      CC 338
consensus_3617#1      --