cluster # 3643

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Oryza sativa
cluster # 3643 cluster # 3643 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3643#0 length = 794 sequences # 1

consensus_3643#1 length = 777 sequences # 1

consensusID : consensus_3643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTGCTAAACGGGGACTACTTATTAGA]

[+] EMBL CB627957             [TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTGCTAAACGGGGACTACTTATTAGA]




>consensus_3643#0
TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTCATGC
TTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTA
GCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCT
CAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTC
CTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTG
TAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAAT
CGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGATG
GTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCC
GAATGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTG
CAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATT
ACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGG
ATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTTGTTTCCTGTCCTTGTG
CACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTGCTAAACGGG
GACTACTTATTAGA

consensusID : consensus_3643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 777
fasta sequence

                              [CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGACGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAGGTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGGCATCCACGTCGGCCATGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATTTGCTATCAGTTCAGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGATGAACCGCATGCAGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATT]

[+] EMBL CB659140             [CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGACGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAGGTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGGCATCCACGTCGGCCATGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATTTGCTATCAGTTCAGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGATGAACCGCATGCAGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATT]




>consensus_3643#1
CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGA
CGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAG
GTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCC
CTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAG
GGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGC
GTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGG
CATCCACGTCGGCCATGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGG
CATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGGTCTTCGAGC
ATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATT
TGCTATCAGTTCAGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGA
TGAACCGCATGCAGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAA
GTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGT
CAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3643#0      --------------TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAA 46
consensus_3643#1      CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGA 60
                                    * *  * ***       **      **       **    *  * *

consensus_3643#0      CTCTCTTGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAG 106
consensus_3643#1      CGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAG 120
                      *   *  **   *      *   *    ** ** *     **    *  *   *    **

consensus_3643#0      GCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATT 166
consensus_3643#1      GTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGG---AGTGCGGGTT 177
                      *     **   *   **    *** ***** *   *     *  *     ***   * **

consensus_3643#0      GGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTT--TTGAATTCAGATGCA 224
consensus_3643#1      CCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTG 237
                         *       *     * *  *   *  **** *  * *       *   ** ** *  

consensus_3643#0      ATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGA-CTTCATATTGGTCCTTCC 283
consensus_3643#1      GAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTT 297
                            * **  *  *  *  *  *  * ** *   *  ** *         ***     

consensus_3643#0      AGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGAC----- 338
consensus_3643#1      CGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCT 357
                       *     **  **  **      *    * *      * * *   ***  *  **     

consensus_3643#0      --GAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTAT 396
consensus_3643#1      CGGCATCCACGTCGGCCATGGAA-CGTTTTTGGATCTGTTGCATAA-----TTCGTATGT 411
                        * *** * *    *   **** ****    *  *    * * **     *** * * *

consensus_3643#0      TTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACA-ACTACTGGACCA 455
consensus_3643#1      GAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGG 471
                          **   *  *  * * *     *  ***     *  *** ** * ***  * **   

consensus_3643#0      TCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCC 515
consensus_3643#1      TCTTCGAGCATT--CAAG----CAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGG 525
                      ** ** *  ***   ***       * **     *  *** **   *  **   * *   

consensus_3643#0      GTT--CAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGT 573
consensus_3643#1      ATCTGCAGCGGCATTTGCTATCAGTT-CAGTGTCCTTGCTGAACCCTGAACTGGAATGGA 584
                       *   **  *** *      *** ** *** * * **  *  *  ***   **  ** * 

consensus_3643#0      CTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTC 633
consensus_3643#1      ATTCAAC-----CTTTTTTGATGAACCGCAT--GCAGGT-CATGCTTCTCGGATTTGTGC 636
                       * ** *      ** ***   * *   ***  ***    ***  ***  *   *  * *

consensus_3643#0      TAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGG 693
consensus_3643#1      TTCTTGGACGATCT---CTTGAAGAAAGTGCCAGGCT-TAAGGCTTCTAGC--GATATGA 690
                      *   **     ***   *  ** *    * *    ** *   ****  ***  * * ** 

consensus_3643#0      ATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTT-TG 752
consensus_3643#1      ATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACG 750
                      ***  ** ***     **   *   *       **** *      ** *  * * *   *

consensus_3643#0      ATAGGAACTTCACTGG-GTGCTAAACGGGGACTACTTATTAGA 794
consensus_3643#1      ATCCATCCTCAGATGGTGTTTTGAATT---------------- 777
                      **     **    *** **  * **